SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15265

Length: 325 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15265
GAGGAAGACGAACTACTCGTCAGATTACATCGTCTTCTTGGCAATAGATGGACGTTGATAGCAGGTCGACTCCCTGGTCGGACAGACAATGAAATAAAGAATTACTGGAATACCCAGTTAAGCAAGAGAGTCCAAAAGGGTGAATTCGACCCCAAATATCAGGAGCCTTTTAAAGAAAGGGCCATTCCTCCCCATCAATTTATGATAAAGGAGTCCTACATAAAGATGATTATAACTATGATATTATAGTAGATGGAGACAATCTTGATAGTTATGATCGTGATTTTGTACCAGATACCCATGATGGTATTAATCAAGAAGAAGG

Ace file of the UniGene biog2_v2.0_unigene15265 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene56274	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYB-like protein 2 n=2 Tax=Gossypium RepID=B6E2S8_GOSBA	-	-	2.0e-17	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	myb-like protein p	-	-	2.40689e-30	83%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNN4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 267 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 83 - 390

Fln protein: EEDELLVRLHRLLGNRWTLIAGRLPGRTDNEIKNYWNTQLSKRVQKGEFDPKYQEPFKERAIPPHQFMIKESYIKMIITMIL*

Protein Length: 84

Fln nts: GAGGAAGACGAACTACTCGTCAGATTACATCGTCTTCTTGGCAATAGATGGACGTTGATAGCAGGTCGACTCCCTGGTCGGACAGACAATGAAATAAAGAATTACTGGAATACCCAGTTAAGCAAGAGAGTCCAAAAGGGTGAATTCGACCCCAAATATCAGGAGCCTTTTAAAGAAAGGGCCATTCCTCCCCATCAATTTATGATAAAGGAGTCCTACATAAAGATGATTATAACTATGATATTATAGTAGATGGAGACAATCTTGATAGTTATGATCGTGATTTTGTACCAGATACCCATGATGGTATTAATCAAGAAGAAGG

Fln Alignment:

biogeco2_mira_c12626___EEDELLVRLHRLLGNRWTLIAGRLPGRTDNEIKNYWNTQLSKRVQKGEFDPKYQEPFKE
B8LNN4__________________EEEDLILRLHRLLGNRWSLIAGRMPGRTDNEVKNYWNTHLSKKLISQGIDPRTHKPLSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain