SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15262

Length: 383 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15262
CAGACTTGTACATGCTGGCGCAGGCACTCTTCCTTGGCAAACATTACCGAAGAGCCCTCCATGTTCTATGCAATTCCAAGATCATCTTCAAAGACCTCCGCTTTCGATACCTCGCAGCTAAATGCCTCGAGGAAATGAAAGAATGGCAACAATGCTTGGAGATGCTTGGGGATGCCAAGGTTGGAGAGGATGGAAGTATTGAAGGACCCGAAGATCAAAATATGGAAAAGGATGCTGAGGATCAAGAAATCAATATTACTGCGGCGATATGTTTTTACGAGGCAAAGCATATGATGCATTAGAAAACCGTGTTCAAGCTCTTCAATGGTATAAAGCTGCTATCAAGGCAGATCCTTACTGCTACGAGGCATTAGAGTGTCTCC

Ace file of the UniGene biog2_v2.0_unigene15262 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1039	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	anaphase-promoting complex subunit 6 [Arabidopsis thaliana] sp\|B3DNN5.1\|CDC16_ARATH RecName: Full=Anaphase-promoting complex subunit 6; AltName: Full=Cell division cycle protein 16 homolog; Short=CDC16 homolog; AltName: Full=Cyclosome subunit 6; AltName:	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	cell division	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	regulation of DNA endoreduplication	GO:0032875	Biological Process	82%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	82%
Blast2go	cell division	GO:0051301	Biological Process	82%
Blast2go	binding	GO:0005488	Molecular Function	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADE4

Fln msg: Overlapping hits, possible frame ERROR between 287 and 272, Distance to subject end: 367 aas, your sequence is shorter than subject: 127 - 533

Fln protein: DLYMLAQALFLGKHYRRALHVLCNSKIIFKDLRFRYLAAKCLEEMKEWQQCLEMLGDAKVGEDGSIEGPEDQNMEKDAEDQEINITAAIxxxxxxxYDALENRVQALQWYKAAIKADPYCYEALECL

Protein Length: 128

Fln nts: CAGACTTGTACATGCTGGCGCAGGCACTCTTCCTTGGCAAACATTACCGAAGAGCCCTCCATGTTCTATGCAATTCCAAGATCATCTTCAAAGACCTCCGCTTTCGATACCTCGCAGCTAAATGCCTCGAGGAAATGAAAGAATGGCAACAATGCTTGGAGATGCTTGGGGATGCCAAGGTTGGAGAGGATGGAAGTATTGAAGGACCCGAAGATCAAAATATGGAAAAGGATGCTGAGGATCAAGAAATCAATATTACTGCGGCGATAxxxxxxxxxxxxxxxxxxxxxTATGATGCATTAGAAAACCGTGTTCAAGCTCTTCAATGGTATAAAGCTGCTATCAAGGCAGATCCTTACTGCTACGAGGCATTAGAGTGTCTCC

Fln Alignment:

biogeco2_mira_c12623___DLYMLAQALFLGKHYRRALHVLCNSKIIFKDLRFRYLAAKCLEEMKEWQQCLEMLGDAKVGEDGSIEGPEDQNMEKDAEDQEINITAAICxxxxxAYDALENRVQALQWYKAAIKADPYCYEALECL
D5ADE4__________________DLYMLAQALFLGKHYRRALHVLCNSKIIFKDLRFRYLAAKCLEEMKEWQQCLEMLGDAKVGEDGSIEGPEDQNMEKDAEDQEINITAAICxxxxxAYDALENRVQALQWYKAAIKADPYCYEALECL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain