SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14793

Length: 305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14793
ATGGGGGGGACTTCGCCAGTTCAGCATGAAAGTATGTCAAAAGGTCGAGAGCAAGGGTCGGACCACGTATAATGAGGTTGCAGATGAATTAGTTGCAGAATATGCAAATCCTAACAGTGCGCTCATTTCTCCCGATCAGCAACAATATGATGAGAAAACATAAGGCGAAGGGTGTATGATGCATTGAATGTACTGATGGCAATGGACATCATATCAAAGGACAAGAAGGAAATTCAGTGGAAGGGGTTACCTAGCACAAGTCCTAATGACCTTGAAGACTTGAAGACAAAGCGCATGGGATTGCG

Ace file of the UniGene biog2_v2.0_unigene14793 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8315	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor DP1 [Populus tremula x Populus tremuloides] gb\|AAP73785.1\| DP1 [Populus tremula x Populus tremuloides]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	transcription factor e2 dimerization partner protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	73%
Blast2go	G1/S transition of mitotic cell cycle	GO:0000082	Biological Process	73%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	73%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	73%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	73%
Blast2go	transcription factor complex	GO:0005667	Cellular Component	73%
Blast2go	cytoplasm	GO:0005737	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Transcription factor DP, C-terminal	IPR014889	-	-
Sma3	Transcription factor DP	IPR015648	-	-
Sma3	Transcription factor DP, subgroup	IPR016556	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABL1

Fln msg: Overlapping hits, possible frame ERROR between 157 and 154, Distance to subject end: 165 aas, your sequence is shorter than subject: 101 - 454

Fln protein: WGGLRQFSMKVCQKVESKGRTTYNEVADELVAEYANPNSALISPDQQQYDxxxIRRRVYDALNVLMAMDIISKDKKEIQWKGLPSTSPNDLEDLKTKRMGL

Protein Length: 102

Fln nts: ATGGGGGGGACTTCGCCAGTTCAGCATGAAAGTATGTCAAAAGGTCGAGAGCAAGGGTCGGACCACGTATAATGAGGTTGCAGATGAATTAGTTGCAGAATATGCAAATCCTAACAGTGCGCTCATTTCTCCCGATCAGCAACAATATGATxxxxxxxxxATAAGGCGAAGGGTGTATGATGCATTGAATGTACTGATGGCAATGGACATCATATCAAAGGACAAGAAGGAAATTCAGTGGAAGGGGTTACCTAGCACAAGTCCTAATGACCTTGAAGACTTGAAGACAAAGCGCATGGGATTGCG

Fln Alignment:

biogeco2_mira_c12059___GLRQFSMKVCQKVESKGRTTYNEVADELVAEYANPNSALISPDQQQYDExNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPSTSPNDLEDLKTKRMGL
D5ABL1__________________GLRQFSMKVCQKVESKGRTTYNEVADELVAEYANPNSALISPDQQQYDExNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPSTSPNDLEHLKADRMGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain