SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14779

Length: 351 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14779
ATGGGGACTTTGGTCCAGCCCTTTCTGCACGAGAGTGGTTCTTGCCTTGGAGTTCAAGGGGTGTCGATTATGAAATCGTGGAGAGCGATACTTCGAATGAAATGGACCAGCTTCTGCAGCTGTATAATCCTGCTCTGAGAACGGTGCCGGTGCTGATTCACAATGGCAGGGCCATACCGGAGTCGTTGATAATCTTAGAATATATCGACGAAACCTGGCCATCTAAAGATGGAGTTGATTTCTTGCCTAAAGATGCCTACGATAGGGGTTTGGCTAGGTTTTGGGCCGATTTCATTGATAAGAAGGTTCTTTCCATCATCGGTGGCATTGTGAAAACAAAAGGCGAGGAAC

Ace file of the UniGene biog2_v2.0_unigene14779 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2364	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Tau class glutathione S-transferase n=2 Tax=Pinus RepID=D3YLT8_9CONI	-	-	44%
FL-Next	tr=Probable glutathione S-transferase; Picea mariana (Black spruce) (Abies mariana).	-	-	48%
Blast2go	tau class glutathione s-transferase	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: O65056

Fln msg: Distance to subject end: 111 aas, atg_distance in limit (1-15): atg_distance = 13, W2: There is no M at the beginning, your sequence is shorter than subject: 116 - 237

Fln protein: GDFGPALSAREWFLPWSSRGVDYEIVESDTSNEMDQLLQLYNPALRTVPVLIHNGRAIPESLIILEYIDETWPSKDGVDFLPKDAYDRGLARFWADFIDKKVLSIIGGIVKTKGEE

Protein Length: 117

Fln nts: _-_ATGGGGACTTTGGTCCAGCCCTTTCTGCACGAGAGTGGTTCTTGCCTTGGAGTTCAAGGGGTGTCGATTATGAAATCGTGGAGAGCGATACTTCGAATGAAATGGACCAGCTTCTGCAGCTGTATAATCCTGCTCTGAGAACGGTGCCGGTGCTGATTCACAATGGCAGGGCCATACCGGAGTCGTTGATAATCTTAGAATATATCGACGAAACCTGGCCATCTAAAGATGGAGTTGATTTCTTGCCTAAAGATGCCTACGATAGGGGTTTGGCTAGGTTTTGGGCCGATTTCATTGATAAGAAGGTTCTTTCCATCATCGGTGGCATTGTGAAAACAAAAGGCGAGGAAC

Fln Alignment:

biogeco2_mira_c12043___RGVDYEIVESDTSNEMDQLLQLYNPALRTVPVLIHNGRAIPESLIILEYIDETWPSKDGVDFLPKDAYDRGLARFWADFIDKKVLSIIGGIVKTKGEE
O65056__________________KGIDYEFIEENMQNKSHLLLQS-NPVNKKIPVLIHNGKPVCESMIIVQYIDEAWDTKAPV-LMPKDPYDRAIARFWAAFVDDKLLPCLRGVFKGQGEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain