SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14026

Length: 229 nt

UniGene Fasta

>biog2_v2.0_unigene14026
ATGGGAATTGTATGTGCATGGACAGGCATTCCAGTTGAAAAGTGTCAACTGACGAGTCTGACAAACTTCTGAAAATGGAAGAAACACTTCACCAACGCATCATTGGCAAGATGAGGCAGTTAAAGCTATCAGTCGAGCTATTCGCCGTGCAAGAGTTGGCCTTAAGAATCCAAACAGGCCAATTGCTAGCTTCATTTTCTCAGGACCTACAGGTGTTGGCAAATCGGAG

Ace file of the UniGene biog2_v2.0_unigene14026

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4965	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic n=3 Tax=core eudicotyledons RepID=CLPAB_SOLLC	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	chaperone protein chloroplastic-like	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-excision repair	GO:0006289	Biological Process	92%
Blast2go	chloroplast organization	GO:0009658	Biological Process	92%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	92%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	92%
Blast2go	protein metabolic process	GO:0019538	Biological Process	92%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	92%
Blast2go	DNA binding	GO:0003677	Molecular Function	92%
Blast2go	nuclease activity	GO:0004518	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	Tic complex	GO:0031897	Cellular Component	92%
Blast2go	cell wall	GO:0005618	Cellular Component	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	92%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	UVR domain	IPR001943	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG2

Fln msg: Distance to subject end: 271 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 56 - 323

Fln protein: QTSENGRNTSPTHHWQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE

Protein Length: 57

Fln nts: ATGGGAATTGTATGTGCATGGACAGGCATTCCAGTTGAAAAGTGTCAACTGACGAGTCTGACAAACTTCTGAAAATGGAAGAAACACTTCACCAACGCATCATTGGCAAGATGAGGCAGTTAAAGCTATCAGTCGAGCTATTCGCCGTGCAAGAGTTGGCCTTAAGAATCCAAACAGGCCAATTGCTAGCTTCATTTTCTCAGGACCTACAGGTGTTGGCAAATCGGAG

Fln Alignment:

biogeco2_mira_c11117___QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE
D5AEG2__________________QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain