SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13793

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13793
ATGGGAGACGGCAATGGCAACCTCCTCCTCTAGAAGTGGGACTACAAGAAAGCTTCAGGTGGTGAGCCCTGTCCCTGCGGACATCGATATCGCTACCTCTGTAGAACCCCATCACATATCGGCCATCGCACATGAGCTTGGCCTTCAACCCCAACATTACGAGCTGTATGGAAGACACAAGGCAAAGGTTCTATTGAGTGTGGCAGAGGAGCTACAGCATTCCCCGGATGGATTCTATGTGGTGGTTGGAGGCATTACTCCCACTCCTTTAGGGGAAGGAAATCCACCACTACTGTCGGCCTATGTCAAGCACTTGGCGCTCACTTGGGCCAAAAGGTGGTGACATGCCTCCGTCAACCGAGTCAAGGACCAACCTTTGGAATAAAAGGAGGAGCTGCAGGGGGGGATACAGTCAAGTCATTCCCATGGATGAATTCAACTTACACATGACAGGAGATATTCATGCTATTACAGCTGCAAACAATCNCCTTGCAGCTGCTATTGATAC

Ace file of the UniGene biog2_v2.0_unigene13793 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1119	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	10-formyltetrahydrofolate synthetase n=3 Tax=rosids RepID=B9GLK3_POPTR	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	10-formyltetrahydrofolate synthetase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Formate--tetrahydrofolate ligase.	EC:6.3.4.3	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	One carbon pool by folate	00670	89%
Blast2go	Carbon fixation pathways in prokaryotes	00720	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	folic acid-containing compound biosynthetic process	GO:0009396	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	one-carbon metabolic process	GO:0006730	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	formate-tetrahydrofolate ligase activity	GO:0004329	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Formate-tetrahydrofolate ligase, FTHFS	IPR000559	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWA2

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 280 and 280, and overlapping frame ERROR between 426 and 402, Distance to subject end: 436 aas, your sequence is shorter than subject: 165 - 602

Fln protein: MATSSSRSGTTRKLQVVSPVPADIDIATSVEPHHISAIAHELGLQPQHYELYGRHKAKVLLSVAEELQHSPDGFYVVVGGITPTPLGExxSTTTVGLCQALGAHLGQKVVTCLRQPSQGPTFGIKGGAxxxxxxxxxxxDEFNLHMTGDIHAITAANNLLAAAID

Protein Length: 166

Fln nts: ATGGGAGACGGCA_-_ATGGCAACCTCCTCCTCTAGAAGTGGGACTACAAGAAAGCTTCAGGTGGTGAGCCCTGTCCCTGCGGACATCGATATCGCTACCTCTGTAGAACCCCATCACATATCGGCCATCGCACATGAGCTTGGCCTTCAACCCCAACATTACGAGCTGTATGGAAGACACAAGGCAAAGGTTCTATTGAGTGTGGCAGAGGAGCTACAGCATTCCCCGGATGGATTCTATGTGGTGGTTGGAGGCATTACTCCCACTCCTTTAGGGGAAxxxxxxTCCACCACTACTGTCGGCCTATGTCAAGCACTTGGCGCTCACTTGGGCCAAAAGGTGGTGACATGCCTCCGTCAACCGAGTCAAGGACCAACCTTTGGAATAAAAGGAGGAGCTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGATGAATTCAACTTACACATGACAGGAGATATTCATGCTATTACAGCTGCAAACAATCtCCTTGCAGCTGCTATTGATAC

Fln Alignment:

biogeco2_mira_c10835___MATSSSRSGTTRKLQVVSPVPADIDIATSVEPHHISAIAHELGLQPQHYELYGRHKAKVLLSVAEELQHSPDGFYVVVGGITPTPLGEGKSTTTVGLCQALGAHLGQKVVTCLRQPSQGPTFGIKGGAAGxxxxxxxxMDEFNLHMTGDIH
A9NWA2__________________MATSSSSSGTIRKLQVVSPVPADIDIASSVEPYHISAIAHELGLQPHHYELYGKCKAKVLLSVAEELQHSPDGFYVVVGGITPTPLGEGKSTTTVGLCQALGAHLGQKVVTCLRQPSQGPTFGIKGGAAGxxxxxxxxMDEFNLHLTGDIH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain