SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13777

Length: 285 nt

UniGene Fasta

>biog2_v2.0_unigene13777
GGTGGAAGAATTCATACGACTGGACAATACGCTCGCCACTATCTCTCTGGGACAACCCTTCTTCTCTGGAGATCACATAGGGTTCGTTGATATCGTGCTTGCACCCTATGTATCCTGGCTGCGGGCAGCCGAATGCCTTGTAAATTTGAAGCTCCCTGATACTTCCAAATGCCCTCACATGAACGAGTGGATGGAGAAATATACGAACAACCCAGTGTACAGAAAGCACTTCCCCAACCTGAGAGGTTGCTGGAATATGCCAGAAGCCTCCGGAAACGCAACTTC

Ace file of the UniGene biog2_v2.0_unigene13777

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2364	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Tau class glutathione S-transferase n=2 Tax=Pinus RepID=D3YLT8_9CONI	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	tau class glutathione s-transferase	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQB6

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 94 - 232

Fln protein: VEEFIRLDNTLATISLGQPFFSGDHIGFVDIVLAPYVSWLRAAECLVNLKLPDTSKCPHMNEWMEKYTNNPVYRKHFPNLRGCWNMPEASGNAT

Protein Length: 95

Fln nts: GGTGGAAGAATTCATACGACTGGACAATACGCTCGCCACTATCTCTCTGGGACAACCCTTCTTCTCTGGAGATCACATAGGGTTCGTTGATATCGTGCTTGCACCCTATGTATCCTGGCTGCGGGCAGCCGAATGCCTTGTAAATTTGAAGCTCCCTGATACTTCCAAATGCCCTCACATGAACGAGTGGATGGAGAAATATACGAACAACCCAGTGTACAGAAAGCACTTCCCCAACCTGAGAGGTTGCTGGAATATGCCAGAAGCCTCCGGAAACGCAACTTC

Fln Alignment:

biogeco2_mira_c10815___QPFFSGDHIGFVDIVLAPYVSWLRAAECLVNLKLPDTSKCPHMNEWMEKYTNNPVYRKHFPN
A9NQB6__________________KPYFGGEQFGFVDIVFIPYACWFHALETLGKWKIPWESEFPRLQQWMKTCMERESVNKILPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain