SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13701

Length: 287 nt

UniGene Fasta

>biog2_v2.0_unigene13701
CCTTGTGTCCGAAGGCCTAACTTATAGGCGAATGGATGGATTAACTCCTGTCAAACAACGAACAGCCTTAATGGATGAATTCAATGAGTCTACACATGTGTTTGTTTTATTCTAACTACAAAGGTTGGGGGCCTAGGAACAAACTTGATCGGGGCAGATAGGGTGATAATTTTCGATCCAGATTGGAATCCTTCCACTGACATGCAGGCAAGGGAGCGTGCTTGGCGTATAGGTCAAACCCGAGATGTGACTGTTTACAGATTGATTACCCGTGGAACAATTGAGGA

Ace file of the UniGene biog2_v2.0_unigene13701

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene38083	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription-coupled repair protein CSB/RAD26 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCT4_PHYPA	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	dna repair and recombination protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	response to gamma radiation	GO:0010332	Biological Process	80%
Blast2go	DNA repair	GO:0006281	Biological Process	80%
Blast2go	binding	GO:0005488	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Formylmethionine deformylase	IPR000181	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	SNF2-related	IPR000330	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3		IPR000910	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	FY-rich, N-terminal	IPR003888	-	-
Sma3	FY-rich, C-terminal	IPR003889	-	-
Sma3	Rubredoxin-type fold	IPR004039	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Agenet	IPR008395	-	-
Sma3	Translocon-associated beta	IPR008856	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR012287	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAS5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 275 aas, your sequence is shorter than subject: 95 - 407

Fln protein: PCVRRPNL*ANGWINSCQTTNSLNG*IQ*VYTCVCFILTTKVGGLGTNLIGADRVIIFDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIE

Protein Length: 96

Fln nts: CCTTGTGTCCGAAGGCCTAACTTATAGGCGAATGGATGGATTAACTCCTGTCAAACAACGAACAGCCTTAATGGATGAATTCAATGAGTCTACACATGTGTTTGTTTTATTCTAACTACAAAGGTTGGGGGCCTAGGAACAAACTTGATCGGGGCAGATAGGGTGATAATTTTCGATCCAGATTGGAATCCTTCCACTGACATGCAGGCAAGGGAGCGTGCTTGGCGTATAGGTCAAACCCGAGATGTGACTGTTTACAGATTGATTACCCGTGGAACAATTGAGGA

Fln Alignment:

biogeco2_mira_c10721___FILTTKVGGLGTNLIGADRVIIFDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIE
D5AAS5__________________FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLTTGTIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain