SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13310

Length: 213 nt

UniGene Fasta

>biog2_v2.0_unigene13310
ATGGTTAATGGGTCTCTAGATAAATTTATATTTGCAGGAAAAGAGAAGGGGAGGCTTTTAGGGTGGGATCAATTATATTCAATTGCTTTGGGTGCTGCCAGAGGAATTACATATTTGCACCAAGATTGCGAGAAGCGCATCATACACTTTGACATCAAACCTCACAACATATTGCTTGATGCAGAGTTTACACCAAAAGTTTCTGATTTTGGT

Ace file of the UniGene biog2_v2.0_unigene13310

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20737	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os04g0176900 protein n=3 Tax=Oryza sativa Japonica Group RepID=C7J1K9_ORYSJ	-	-	4.99997e-41	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	probable receptor-like protein kinase at1g67000-like	-	-	7.73236e-42	77%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLN9

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 71 - 565

Fln protein: MVNGSLDKFIFAGKEKGRLLGWDQLYSIALGAARGITYLHQDCEKRIIHFDIKPHNILLDAEFTPKVSDFG

Protein Length: 72

Fln nts: ATGGTTAATGGGTCTCTAGATAAATTTATATTTGCAGGAAAAGAGAAGGGGAGGCTTTTAGGGTGGGATCAATTATATTCAATTGCTTTGGGTGCTGCCAGAGGAATTACATATTTGCACCAAGATTGCGAGAAGCGCATCATACACTTTGACATCAAACCTCACAACATATTGCTTGATGCAGAGTTTACACCAAAAGTTTCTGATTTTGGT

Fln Alignment:

biogeco2_mira_c10236___NGSLDKFIFAGKEKGRLLGWDQLYSIALGAARGITYLHQDCEKRIIHFDIKPHNILLDAEFTPKVSDFG
B8LLN9__________________NNSLDKILF-DSNKRRQLDWQKRYSIILGITRGLLYLHEDSHLRIIHRDIKPHNILLDKNLNPKIADFG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain