SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12876

Length: 407 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12876
CTGCTCGTGGAGTGCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCCCCAGGCAAATCTGTTCTCATTAAGTGGGGCAGAACTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTGCGTGAGACATTTCAAAGAGCACGCTTAGCGGCTCCCAGTATAATATTCTTTGATGAGGCTGATGCTATTACAGCAAAGCGGAACGGAAGGGAAGAGGAAAATTCCAGTGGTAGTGGTGCTGCAGTTGGAGAAAAGCTTTTGTCTACCTTACTAACTGAGATTGACGGGCTGGAGATCACAAAGGGAGTTCTAGTGCTGGGAGCTACAAATCGTCCTGAGGCAATTGATGATGCACTTATGCGTCCTGGTCGCTTTGA

Ace file of the UniGene biog2_v2.0_unigene12876 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11721	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cell division control protein 48-B [Arabidopsis thaliana] sp\|Q9ZPR1.1\|CD48B_ARATH RecName: Full=Cell division control protein 48 homolog B; Short=AtCDC48b gb\|AAD20084.1\| putative AAA-type ATPase [Arabidopsis thaliana] gb\|AAL32521.1\| putative AAA-type ATPa	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	cell division control protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	80%
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	80%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	80%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVV9

Fln msg: Separated hits, possible frame ERROR between 77 and 79, Distance to subject end: 108 aas, your sequence is shorter than subject: 135 - 416

Fln protein: ARGVLLHGPPGCSKTTLVNAAAHAxxQANLFSLSGAELYSMYVGEGEALLRETFQRARLAAPSIIFFDEADAITAKRNGREEENSSGSGAAVGEKLLSTLLTEIDGLEITKGVLVLGATNRPEAIDDALMRPGRF

Protein Length: 136

Fln nts: CTGCTCGTGGAGTGCTCTTACATGGTCCACCAGGTTGCTCTAAAACTACTCTTGTTAATGCTGCAGCTCATGCTTCxxxCCAGGCAAATCTGTTCTCATTAAGTGGGGCAGAACTTTACTCAATGTATGTTGGAGAAGGTGAAGCTTTACTGCGTGAGACATTTCAAAGAGCACGCTTAGCGGCTCCCAGTATAATATTCTTTGATGAGGCTGATGCTATTACAGCAAAGCGGAACGGAAGGGAAGAGGAAAATTCCAGTGGTAGTGGTGCTGCAGTTGGAGAAAAGCTTTTGTCTACCTTACTAACTGAGATTGACGGGCTGGAGATCACAAAGGGAGTTCTAGTGCTGGGAGCTACAAATCGTCCTGAGGCAATTGATGATGCACTTATGCGTCCTGGTCGCTTTGA

Fln Alignment:

biogeco2_mira_c9727___ARGVLLHGPPGCSKTTLVNAAAHASxQANLFSLSGAELYSMYVGEGEALLRETFQRARLAAPSIIFFDEADAITAKRNGREEENSSGSGAAVGEKLLSTLLTEIDGLEITKGVLVLGATNRPEAIDDALMRPGRF
A9NVV9__________________ARGVLLHGPPGCSKTTLVNAAAHASxQANLFSLSGAELYSMYVGEGEALLRETFQRARLAAPSIIFFDEADAIAAKRNGREEENSSGNGAAVGERLLSTLLTEIDGLEITKGVLVLGATNRPEAIDAALMRPGRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain