SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12588

Length: 641 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene12588 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4018	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Longifolene synthase n=1 Tax=Pinus sylvestris RepID=B4XAK6_PINSY	-	-	96%
FL-Next	tr=Longifolene synthase; Pinus sylvestris (Scots pine).	-	-	94%
Blast2go	longifolene synthase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lyases, Carbon-oxygen lyases, Acting on phosphates.	EC:4.2.3.-	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Monoterpenoid biosynthesis	00902	76%
Blast2go	Sesquiterpenoid biosynthesis	00909	76%
Blast2go	Biosynthesis of terpenoids and steroids	01062	76%
Blast2go	Metabolic pathways	01100	76%
Blast2go	Biosynthesis of secondary metabolites	01110	76%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	carbon-oxygen lyase activity, acting on phosphates	GO:0016838	Molecular Function	76%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	76%
Blast2go	cytoplasm	GO:0005737	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
126	138	CTT CTT CTT CTT C	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain