SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12542

Length: 447 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12542
GTTGTTAGGTGCTAGTCTCAGTCCCTTTGTGGCGCGGGTTCGCATAGCACTTGCTCTTAAAGGGATCCATTACCAGTTCGTAGAAGAGAACTTACAAAATAAGAGCGAGCTGCTACTGCAATCAAACCCTATTCACAAGAAGATTCCAGTGCTTATCCACAATGGAAAGCCCGTTTGTGAATCTATGATTATTGTGCAGTACATCGAAGAGGCGTGGGGAAATAAGGAACCAAATCTTATGCCCAAAGATCCATATGACCGAGCCATTGCCCGCTTCTGGGCTGCCTTTGTAGACGATAAGCTGGTGCCATGCCTTAGGGGAGTTTTCACTGGCCAGGGCGAGCAGCAACAGAAAGCGGTACAAGAATCGGTGGCAAACTTTCTTATATTGGAGGAAGCTCTGCGAATGAACCCCTGCTCCTCGGGGAAACTGTATTTTGGAGGAGA

Ace file of the UniGene biog2_v2.0_unigene12542 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29297	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	tau class glutathione s-transferase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2I2

Fln msg: Distance to subject end: 77 aas, atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning, your sequence is shorter than subject: 148 - 239

Fln protein: LLGASLSPFVARVRIALALKGIHYQFVEENLQNKSELLLQSNPIHKKIPVLIHNGKPVCESMIIVQYIEEAWGNKEPNLMPKDPYDRAIARFWAAFVDDKLVPCLRGVFTGQGEQQQKAVQESVANFLILEEALRMNPCSSGKLYFGG

Protein Length: 149

Fln nts: GTTGTTAGGTGCTAGTCTCAGTCCCTTTGTGGCGCGGGTTCGCATAGCACTTGCTCTTAAAGGGATCCATTACCAGTTCGTAGAAGAGAACTTACAAAATAAGAGCGAGCTGCTACTGCAATCAAACCCTATTCACAAGAAGATTCCAGTGCTTATCCACAATGGAAAGCCCGTTTGTGAATCTATGATTATTGTGCAGTACATCGAAGAGGCGTGGGGAAATAAGGAACCAAATCTTATGCCCAAAGATCCATATGACCGAGCCATTGCCCGCTTCTGGGCTGCCTTTGTAGACGATAAGCTGGTGCCATGCCTTAGGGGAGTTTTCACTGGCCAGGGCGAGCAGCAACAGAAAGCGGTACAAGAATCGGTGGCAAACTTTCTTATATTGGAGGAAGCTCTGCGAATGAACCCCTGCTCCTCGGGGAAACTGTATTTTGGAGGAGA

Fln Alignment:

biogeco2_mira_c9335___LLGASLSPFVARVRIALALKGIHYQFVEENLQNKSELLLQSNPIHKKIPVLIHNGKPVCESMIIVQYIEEAWGNKEPNLMPKDPYDRAIARFWAAFVDDKLVPCLRGVFTGQGEQQQKAVQESVANFLILEEALRMNPCSSGKLYFGG
A9P2I2__________________LLGASISPFVLRVRIALALKGIHYEFIEENLLNKSQLLLQSNPVHKKIPVLIHNGKPVCESMIIVQYIEEAWDSKAPNLMPKDPYDRAIARFWAAFVDDKLLPCVRGVFTGQGEQQQKAVEESVANFLVLEEALRTSLCFSGKPYFGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain