SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12300

Length: 370 nt

UniGene Fasta

>biog2_v2.0_unigene12300
ATGGGTTGGTTCTGACACTTCAAAGCCTTGATCGAAAACCAATTCGAGAAGAAAATGGGGATATTGAGGACTGATAATGGGATTGAGTATGAATCCAATGAATTCCAAGATTATTGCAGAGAAGCTGGCGTTAAGAGGGAGACTATAATGCCATACACTCTCGAGCAGAATGGTGTGGCTGAAAGGATGAGTCGCTCTATTGTAGAAGCTGTTTGTGCCATGCTTCATGGTCAAGGCCTTCCGAAGTTTTTATGGGCTGAAGTTGCAAATACCGCCGTGTATGTTCAAAATTGATGCCCTCATCAAGGATTGGACTCCATGACTCTCGAAGAAATGTTCACTGGTAAGAAACCTGATGTCTCTCATTTTA

Ace file of the UniGene biog2_v2.0_unigene12300

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12254	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	retrotransposon unclassified	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	65%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	65%
Blast2go	Methane metabolism	00680	65%
Blast2go	Phenylpropanoid biosynthesis	00940	65%
Blast2go	Biosynthesis of phenylpropanoids	01061	65%
Blast2go	Metabolic pathways	01100	65%
Blast2go	Biosynthesis of secondary metabolites	01110	65%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	65%
Blast2go	cation transport	GO:0006812	Biological Process	65%
Blast2go	DNA recombination	GO:0006310	Biological Process	65%
Blast2go	DNA binding	GO:0003677	Molecular Function	65%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	65%
Blast2go	cell part	GO:0044464	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3		IPR010256	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 123 - 407

Fln protein: MGWF*HFKALIENQFEKKMGILRTDNGIEYESNEFQDYCREAGVKRETIMPYTLEQNGVAERMSRSIVEAVCAMLHGQGLPKFLWAEVANTAVYVQN*CPHQGLDSMTLEEMFTGKKPDVSHF

Protein Length: 124

Fln nts: ATGGGTTGGTTCTGACACTTCAAAGCCTTGATCGAAAACCAATTCGAGAAGAAAATGGGGATATTGAGGACTGATAATGGGATTGAGTATGAATCCAATGAATTCCAAGATTATTGCAGAGAAGCTGGCGTTAAGAGGGAGACTATAATGCCATACACTCTCGAGCAGAATGGTGTGGCTGAAAGGATGAGTCGCTCTATTGTAGAAGCTGTTTGTGCCATGCTTCATGGTCAAGGCCTTCCGAAGTTTTTATGGGCTGAAGTTGCAAATACCGCCGTGTATGTTCAAAATTGATGCCCTCATCAAGGATTGGACTCCATGACTCTCGAAGAAATGTTCACTGGTAAGAAACCTGATGTCTCTCATTTTA

Fln Alignment:

biogeco2_mira_c9038___F*HFKALIENQFEKKMGILRTDNGIEYESNEFQDYCREAGVKRETIMPYTLEQNGVAERMSRSIVEAVCAMLHGQGLPKFLWAEVANTAVYVQN*CPHQGLDSMTLEEMFTGKKPDVSHF
B8LKX7__________________FKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain