SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12132

Length: 1667 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene12132

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26477	44/45

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine synthase 3 n=6 Tax=Embryophyta RepID=METK3_ARATH	-	-	88%
FL-Next	sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	s-adenosylmethionine synthetase	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	methionine metabolic process	GO:0006555	Biological Process	96%
Blast2go	response to cold	GO:0009409	Biological Process	96%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	96%
Blast2go	cell wall	GO:0005618	Cellular Component	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	S-adenosylmethionine synthetase	IPR002133	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRR6

Fln msg:

Fln protein: METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKANVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYRNDGGAMVPQRVHTVLISTQHDETVTNDQIAADLKQHVIKPVIPDRYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGTIPDKEILELIKKNFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQEKVLQA*

Protein Length: 396

Fln nts: ATGGGGAGGATTGAATTACATAGAGTTTTGTTTACATAGATGTTGTTGCAGGGTTGACAGAGGGTGTGCAATTCCTCTTTTTGTATTGCATGGGCATTGAATCTTGATTTATATAGATCTTGTTATGGGTTTCTGAATCATGCATTCTGATATGGGTTTTGTTTGTTTGTTATGTTTTCAGAATCGAG_-_ATGGAGACCTTCCTCTTCACATCCGAGTCTGTGAACGAGGGACACCCAGACAAGCTGTGTGACCAGATCTCTGATGCAGTGTTGGATGCATGCCTTACCCAGGACCCTGACAGCAAGGTAGCATGCGAGACCTGCACTAAAACGAACATGGTCATGGTTTTTGGTGAAATCACCACCAAGGCCAATGTCGACTATGAGCAGATCGTTCGCAAGACCTGCAGGGAGATCGGTTTCATTTCTGATGATGTGGGTCTTGATGCTGATCACTGCAAAGTGCTGGTTAATATTGAACAGCAGAGTCCTGACATTGCGCAGGGCGTTCATGGACACTTTACCAAAAAGCCCGAGGAGATTGGGGCCGGTGACCAGGGTCACATGTTTGGCTATGCAACTGATGAGACCCCTGAGCTGATGCCCCTGACCCATGTGCTGGCTACCAAGCTGGGAGCAAAGCTCACAGAGGTCAGAAAGAATGGAACCTGCCCCTGGTTGAGGCCTGATGGAAAAACCCAAGTGACCATTGAGTACAGAAATGACGGGGGTGCCATGGTTCCTCAGCGTGTTCACACAGTTCTCATCTCTACTCAGCATGATGAGACTGTGACCAATGACCAGATCGCTGCAGATCTGAAGCAGCATGTGATAAAGCCGGTGATTCCTGACAGGTACCTGGATGAGAACACCATATTCCATTTGAACCCATCTGGGCGATTTGTGATCGGAGGGCCTCATGGAGATGCAGGGCTTACGGGAAGAAAAATCATCATAGACACATATGGAGGGTGGGGAGCTCATGGAGGAGGGGCATTCTCTGGGAAGGATCCCACCAAGGTGGACCGAAGTGGAGCTTACATAGTTAGACAGGCTGCCAAGAGCATTGTGGCAGCTGGGCTTGCAAGGAGATGCCTTGTGCAGGTCTCTTATGCCATCGGAGTGCCAGAGCCGTTGTCTGTGTTCGTTGACTCGTATGGTACAGGGACCATTCCAGACAAGGAAATTCTGGAGCTCATCAAAAAGAACTTTGATTTCAGGCCTGGCATGATGACTATCAATCTTGATCTGAAGAGAGGAGGAAATGGGAGGTTCCAAAAGACAGCCGCTTATGGTCACTTCGGCAGGGACGACCCTGATTTCACCTGGGAGATTGTCAAACCTCTGAAGCAGGAAAAGGTTCTCCAAGCGTAG___TAATTAGGCACCAGCCTTTTCATTATTCATTGGTCTCAATAATAAGCTCAAGTTTAACTTCAGCTGAATGTTGTTTTTCCGTACAAGTAGTATTAATTTCTGTTTCCTTGTGAGTCTAGTTTTGGCCTCCAAGATGTGGTTGGCTTAGAGAACCTGATGTTTGTACTCCATTCATATATGTTTTTGAGGGATGCCCTGTGCCCTCTTCATCCAGTAGCATAATAAGCTAAGCTGCTGCTGGTGATTATGTATTCTGTGGGCTGTAATGGCTAAGTTGTTGACTTTGCAGAATGC

Fln Alignment:

biogeco2_mira_c8832___METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKANVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYRNDGGAMVPQRVHTVLISTQHDETVTNDQIAADLKQHVIKPVIPDRYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGTIPDKEILELIKKNFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQEKVL
B8LRR6__________________METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKANVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCSWLRPDGKTQVTIEYRNDGGAMVPQRVHTVLISTQHDETVTNDQIAADLKQHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGTIPDKEILELIKKNFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQKKTL

SSRs (tot: 1)

Start position	End position	Sequence	Length
158	171	TTTG TTTG TTTG TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain