SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12123

Length: 526 nt

UniGene Fasta

>biog2_v2.0_unigene12123
AGATGCTTCGGCTTGTAATGAATTGCGGAATGCTGTGTTTTCAAAGGTCGCTTTGCGAACAATTCGACTTGTTGCTAGGAAGGTATTTTCGCATCTTCATGATCTTGACCTTCAGTATCATTTAAGTCGTCAAACTGGGGCATTAAGTCGTACAATTGATCGTGGAACGCGTGGGATAAATTTCATTCTTTCTTCCATGGTATTCAATGTTGTACCGACTATATTAGAGATATCAATGGTTGCAGGCATTTTAGCATATAAGTTTGGTGCTCCATTTGCATTGGTTACATCTCTTGCTGTTGGCGGTTATGTTGCTTTCACCTTGTTTGTGACACAGTGGCGGACCAAATTTCGACAGGTTATGAACAAAGCTGACAATGATGCAAATACACGGGCTATTGATTCACTCATAACTATGAGACTGTCAAATATTTCACTAATGAGGAATTTGAAGTTAAAAATATGATGAGTTCCTAAAGAAGTATGAGGATGCTTCCCTGAAGACTCAGAGCAGTCTGGCGTTTCT

Ace file of the UniGene biog2_v2.0_unigene12123

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12252	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SJG4_VITVI	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	abc transporter family of the mitochondria family	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	79%
Blast2go	Mo-molybdopterin cofactor biosynthetic process	GO:0006777	Biological Process	79%
Blast2go	positive regulation of catalytic activity	GO:0043085	Biological Process	79%
Blast2go	cellular iron ion homeostasis	GO:0006879	Biological Process	79%
Blast2go	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	79%
Blast2go	actin filament-based movement	GO:0030048	Biological Process	79%
Blast2go	positive regulation of programmed cell death	GO:0043068	Biological Process	79%
Blast2go	pollen development	GO:0009555	Biological Process	79%
Blast2go	chloroplast organization	GO:0009658	Biological Process	79%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	79%
Blast2go	response to cold	GO:0009409	Biological Process	79%
Blast2go	response to lead ion	GO:0010288	Biological Process	79%
Blast2go	transmembrane transport	GO:0055085	Biological Process	79%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	79%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	79%
Blast2go	regulation of multicellular organism growth	GO:0040014	Biological Process	79%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	79%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	79%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	79%
Blast2go	enzyme activator activity	GO:0008047	Molecular Function	79%
Blast2go	motor activity	GO:0003774	Molecular Function	79%
Blast2go	DNA binding	GO:0003677	Molecular Function	79%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	79%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	79%
Blast2go	apoplast	GO:0048046	Cellular Component	79%
Blast2go	stromule	GO:0010319	Cellular Component	79%
Blast2go	phragmoplast	GO:0009524	Cellular Component	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	79%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	79%
Blast2go	cell plate	GO:0009504	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%
Blast2go	myosin complex	GO:0016459	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW03

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 275 aas, your sequence is shorter than subject: 155 - 636

Fln protein: DASACNELRNAVFSKVALRTIRLVARKVFSHLHDLDLQYHLSRQTGALSRTIDRGTRGINFILSSMVFNVVPTILEISMVAGILAYKFGAPFALVTSLAVGGYVAFTLFVTQWRTKFRQVMNKADNDANTRAIDSLITMRLSNISLMRNLKLKI*

Protein Length: 156

Fln nts: AGATGCTTCGGCTTGTAATGAATTGCGGAATGCTGTGTTTTCAAAGGTCGCTTTGCGAACAATTCGACTTGTTGCTAGGAAGGTATTTTCGCATCTTCATGATCTTGACCTTCAGTATCATTTAAGTCGTCAAACTGGGGCATTAAGTCGTACAATTGATCGTGGAACGCGTGGGATAAATTTCATTCTTTCTTCCATGGTATTCAATGTTGTACCGACTATATTAGAGATATCAATGGTTGCAGGCATTTTAGCATATAAGTTTGGTGCTCCATTTGCATTGGTTACATCTCTTGCTGTTGGCGGTTATGTTGCTTTCACCTTGTTTGTGACACAGTGGCGGACCAAATTTCGACAGGTTATGAACAAAGCTGACAATGATGCAAATACACGGGCTATTGATTCACTCATAACTATGAGACTGTCAAATATTTCACTAATGAGGAATTTGAAGTTAAAAATATGATGAGTTCCTAAAGAAGTATGAGGATGCTTCCCTGAAGACTCAGAGCAGTCTGGCGTTTCT

Fln Alignment:

biogeco2_mira_c8819___ASACNELRNAVFSKVALRTIRLVARKVFSHLHDLDLQYHLSRQTGALSRTIDRGTRGINFILSSMVFNVVPTILEISMVAGILAYKFGAPFALVTSLAVGGYVAFTLFVTQWRTKFRQVMNKADNDANTRAIDSLI
A9NW03__________________SSGLNEVRYVVFAPIGHAVGRRIGVYLLQHILYLDLSFHLDKSSGVLLRILERAQRSVIHIFRAVVFTFIPTAIELVLVCALLSHQVGAAVAGIVLLAFLAYVIWTVKITTAAALSRIKANKFEERVSGKAIDALL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain