SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12120

Length: 541 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12120
GTCACAGAAGGAGTGGACAAATTCTTCAAGAACCGCATAGACAAATACAAGAGCACGGTGTTTAAGGTCAATATGCCGCCGGGTCCGCCCATCGTATTGGACTCGCGAGTGATAATGCTGCTGGACGGCAAGAGCTTCCCCGTGCTTTACGATCTGAGCAAGGTGGAGAAGAAGAATGTGCTCACCGGCAATTACATGCCCAGCACTGCTTTCACCGGAGGTTACCGCGTTGGTGTCTATCTGGATCCCTCCGAAGAGAACCACAACAAACTCAAGAGATTTTGCTTTGAGGTTCTCAAGAACAGTCGAGACAGATATTTCCCCGAGTTTTCCCGGGCATTCGACGAGCTCAGCGCCGCTGTGGACAAAGAAATGGCGAGTAGCAGGAAGGCGTCTTTTGCCACGCAGATCCAGCAGCTGATATTCAATTTTCTTTGCCGGTCTATAACGGGGGCGGACCCGGTCACTCAGGGTCTCGGAACCGACGGCCCTTCGTATGTTACACAGTGGCTCGCTCCTCAGCTCGCTCCTATAGCGAGCT

Ace file of the UniGene biog2_v2.0_unigene12120 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11361	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 n=1 Tax=Panax notoginseng RepID=F4YF70_9APIA	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	allene oxide synthase	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	lipid biosynthetic process	GO:0008610	Biological Process	73%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	73%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	73%
Blast2go	heme binding	GO:0020037	Molecular Function	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome P450	IPR001128	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX03

Fln msg: Distance to subject end: 268 aas, your sequence is shorter than subject: 180 - 484

Fln protein: VTEGVDKFFKNRIDKYKSTVFKVNMPPGPPIVLDSRVIMLLDGKSFPVLYDLSKVEKKNVLTGNYMPSTAFTGGYRVGVYLDPSEENHNKLKRFCFEVLKNSRDRYFPEFSRAFDELSAAVDKEMASSRKASFATQIQQLIFNFLCRSITGADPVTQGLGTDGPSYVTQWLAPQLAPIAS

Protein Length: 181

Fln nts: GTCACAGAAGGAGTGGACAAATTCTTCAAGAACCGCATAGACAAATACAAGAGCACGGTGTTTAAGGTCAATATGCCGCCGGGTCCGCCCATCGTATTGGACTCGCGAGTGATAATGCTGCTGGACGGCAAGAGCTTCCCCGTGCTTTACGATCTGAGCAAGGTGGAGAAGAAGAATGTGCTCACCGGCAATTACATGCCCAGCACTGCTTTCACCGGAGGTTACCGCGTTGGTGTCTATCTGGATCCCTCCGAAGAGAACCACAACAAACTCAAGAGATTTTGCTTTGAGGTTCTCAAGAACAGTCGAGACAGATATTTCCCCGAGTTTTCCCGGGCATTCGACGAGCTCAGCGCCGCTGTGGACAAAGAAATGGCGAGTAGCAGGAAGGCGTCTTTTGCCACGCAGATCCAGCAGCTGATATTCAATTTTCTTTGCCGGTCTATAACGGGGGCGGACCCGGTCACTCAGGGTCTCGGAACCGACGGCCCTTCGTATGTTACACAGTGGCTCGCTCCTCAGCTCGCTCCTATAGCGAGCT

Fln Alignment:

biogeco2_mira_c8816___VTEGVDKFFKNRIDKYKSTVFKVNMPPGPPIVLDSRVIMLLDGKSFPVLYDLSKVEKKNVLTGNYMPSTAFTGGYRVGVYLDPSEENHNKLKRFCFEVLKNSRDRYFPEFSRAFDELSAAVDKEMASSRKASFATQIQQLIFNFLCRSITGADPVTQGLGTDGPSYVTQWLAPQLAPIAS
A9NX03__________________VTEGVDKFFKNRIDKYKSTVFKVNMPPGPPIVWDSRVVMLLDGKSFPVLYDLSKVEKKNVLTGAYMPSTAFTGGYRVSVYLDPSEENHSKLKRFCFEALKNSRDRYFPEFSRAFDELSAAVDKEMASSGKASFATQIEQLIFNFLCRSITGADPVTQGLGTDGPSYVTQWLAPQLAPIAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain