SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11807

Length: 362 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11807
TAGCGGATGATCAGAGCCTACTGCCAAGCCGCAGCCACTCTCAATCTCCTCAGAGCCTTCGCCACTGGAGGTACGCCGCTATGCAGAGAGTTACGCAGTGGAATCTCAATTTCACCGAGCACAGCGAACAAGGCGACAGGTATCGTGAGCTGGCGCACCGCGTGGACGAGGCCCTTGGTTTCATGGGGGCTGCGGGGCTAACAGTCGATCACCCCATTATGACCTCCACGGAGTTCTGGACATCACACGAATGCCTCCTGCTCCCGTACGAGCAGGTGCTGACGAGGCAGGACTCCACGTCAGGGCTCTACTATGACTGCTCCGCACACATGCTGTGGGTTGGGGAGCGGACACGTTAGCTG

Ace file of the UniGene biog2_v2.0_unigene11807 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15992	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 02 n=4 Tax=Vitis vinifera RepID=D0VBC5_VITVI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	2-dehydro-3-deoxyphosphoheptonate aldolase 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	carboxylic acid biosynthetic process	GO:0046394	Biological Process	0.0	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	DAHP synthetase, class II	IPR002480	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 194 aas, your sequence is shorter than subject: 119 - 535

Fln protein: ADDQSLLPSRSHSQSPQSLRHWRYAAMQRVTQWNLNFTEHSEQGDRYRELAHRVDEALGFMGAAGLTVDHPIMTSTEFWTSHECLLLPYEQVLTRQDSTSGLYYDCSAHMLWVGERTR*

Protein Length: 120

Fln nts: TAGCGGATGATCAGAGCCTACTGCCAAGCCGCAGCCACTCTCAATCTCCTCAGAGCCTTCGCCACTGGAGGTACGCCGCTATGCAGAGAGTTACGCAGTGGAATCTCAATTTCACCGAGCACAGCGAACAAGGCGACAGGTATCGTGAGCTGGCGCACCGCGTGGACGAGGCCCTTGGTTTCATGGGGGCTGCGGGGCTAACAGTCGATCACCCCATTATGACCTCCACGGAGTTCTGGACATCACACGAATGCCTCCTGCTCCCGTACGAGCAGGTGCTGACGAGGCAGGACTCCACGTCAGGGCTCTACTATGACTGCTCCGCACACATGCTGTGGGTTGGGGAGCGGACACGTTAGCTG

Fln Alignment:

biogeco2_mira_c8438___DDQSLLPS-----RSHSQSPQSLRHWR------YAAMQRVTQWNLNFTEHSEQGDRYRELAHRVDEALGFMGAAGLTVDHPIMTSTEFWTSHECLLLPYEQVLTRQDSTSGLYYDCSAHMLWVGERTR
A9NUF5__________________DEKSRIPDPERMIRAYCQSAATLNLLRAFATGGYAAMQRVNQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFYTSHECLLLPYEEALTRQDSTSGKFYDCSAHMLWIGERTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain