SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11505

Length: 425 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11505
ATGGGATGGTCAGGAGCACAGCTTGCACAGCTTATTCAAGAGGCTGCTTTGGTCGCTGTTAGGCATGGCCATGATTCAATTGTTCAATCTGACATGAATAAGGCAGTTGACAGGCTTACAATTGGGCCAGAGCGTAAAGGTATTGAACAAATATCACCATTTCTCTGGCGGAGGGCAACAGCCGAATCGGCATTGCATTGGCATCACATCTTTTGCGGCGCTTGGAGAATGCCTGTGTTGAAAGTTGTAATCGAATATCTATAATTCCTTGTGGTGACACACTTTCACGAACATTTTTAACCGACTTGATGAGGAGGCTTATATTTTTGAGCGGCGACCCCAACTGCTACATCGATTGCAGGTAATGCTAGGGGCCAGGGCAGCTGAAGAGGTGATGTATGGACGCAATACATCGACAATATCAT

Ace file of the UniGene biog2_v2.0_unigene11505 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1532	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	FtsH extracellular protease [Arabidopsis thaliana] gb\|AAB63626.1\| cell division protein isolog [Arabidopsis thaliana] emb\|CAB43894.1\| cell division protein-like [Arabidopsis thaliana] emb\|CAB81312.1\| cell division protein-like [Arabidopsis thaliana] gb\|AE	-	-	61%
FL-Next	tr=Cell division protein ftsH, putative; Ricinus communis (Castor bean).	-	-	65%
Blast2go	cell division protein	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	66%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	cell division	GO:0051301	Biological Process	66%
Blast2go	proteolysis	GO:0006508	Biological Process	66%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	66%
Blast2go	ATP binding	GO:0005524	Molecular Function	66%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RCV1

Fln msg: Overlapping hits, possible frame ERROR between 186 and 180, and possible frame ERROR between 290 and 293, Distance to subject end: 159 aas, your sequence is shorter than subject: 142 - 925

Fln protein: MGWSGAQLAQLIQEAALVAVRHGHDSIVQSDMNKAVDRLTIGPERKGIEQISPFLWRRAxxxxGIALASHLLRRLENACVESCNRISIIPCGDTLSxxIFNRLDEEAYIFERRPQLLHRLQVMLGARAAEEVMYGRNTSTIS

Protein Length: 143

Fln nts: ATGGGATGGTCAGGAGCACAGCTTGCACAGCTTATTCAAGAGGCTGCTTTGGTCGCTGTTAGGCATGGCCATGATTCAATTGTTCAATCTGACATGAATAAGGCAGTTGACAGGCTTACAATTGGGCCAGAGCGTAAAGGTATTGAACAAATATCACCATTTCTCTGGCGGAGGGCAxxxxxxxxxxxxGGCATTGCATTGGCATCACATCTTTTGCGGCGCTTGGAGAATGCCTGTGTTGAAAGTTGTAATCGAATATCTATAATTCCTTGTGGTGACACACTTTCACxxxACATTTTTAACCGACTTGATGAGGAGGCTTATATTTTTGAGCGGCGACCCCAACTGCTACATCGATTGCAGGTAATGCTAGGGGCCAGGGCAGCTGAAGAGGTGATGTATGGACGCAATACATCGACAATATCAT

Fln Alignment:

biogeco2_mira_c8067___GWSGXXXXXXXXXXXXXAVRHGHDSIVQSDMNKAVDRLTIGPERKGIEQISPFLWRRATxxIGIALASHLLRRLENACVESCNRISIIPCGDTLSRxIFNRLDEEAYIFERRPQLLHRLQVMLGARAAEEVMYGRNTSTIS
B9RCV1__________________GWTGAKLAQLVQEAALVAVRQGHASIIQSDIDDAVDRLTVGPKRVGIDLGHQGQCRRATxxVGVAMTSHLLRLYEDAKVECCDRISIVPRGQTLSQxVFHRLDDESYMFERRPQLLHRLQVLLGARAAEEVIYGRNTSRAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain