SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11392

Length: 343 nt

UniGene Fasta

>biog2_v2.0_unigene11392
GTAAATTGACGGGTGACATTATCAACAAAACAGAGCAACATATCTGGAAGCATCTAAGTGGCAAAAAATTTCAGAAAAGATTAGCTGAGAAAGAGGCAGAGAAAGAGAGGTTGCGCAAAGCGGGGAGGAAGATTGAAAATGGCTCTGAGCCAAAAAAGATTAGGACCAAGATGAATAAACATAGTAATGATGTGGATTTAGTTAAGAATAATGCCACTGCTACTGCAGATGCTGAGCCTAAGAGTGATTCTGAAGGATCAGATTTTGGACTCCACCTGTAGGTAGTCGGTGGGATGATGATGATGGCAAAGACAGATGGGAGGGTCTTACAGACTCCAAGTCA

Ace file of the UniGene biog2_v2.0_unigene11392

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6843	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana] emb\|CAB87783.1\| putative protein [Arabidopsis thaliana] dbj\|BAF01166.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED92035.1\| Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]	-	-	6.0e-38	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	surfeit locus protein 2	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	Surfeit locus 2	IPR008833	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC36

Fln msg: Overlapping hits, possible frame ERROR between 266 and 263, Distance to subject end: 71 aas, your sequence is shorter than subject: 58 - 128

Fln protein: MNKHSNDVDLVKNNATATADAEPKSDSEGSxxxTPPVGSRWDDDDGKDRWEGLTDSKS

Protein Length: 59

Fln nts: GTAAATTGACGGGTGACATTATCAACAAAACAGAGCAACATATCTGGAAGCATCTAAGTGGCAAAAAATTTCAGAAAAGATTAGCTGAGAAAGAGGCAGAGAAAGAGAGGTTGCGCAAAGCGGGGAGGAAGATTGAAAATGGCTCTGAGCCAAAAAAGATTAGGACCAAG_-_ATGAATAAACATAGTAATGATGTGGATTTAGTTAAGAATAATGCCACTGCTACTGCAGATGCTGAGCCTAAGAGTGATTCTGAAGGATCAxxxxxxxxxACTCCACCTGTAGGTAGTCGGTGGGATGATGATGATGGCAAAGACAGATGGGAGGGTCTTACAGACTCCAAGTCA

Fln Alignment:

biogeco2_mira_c7934___MNKHSNDVDLVKNNATATADAEPKSDSEGSDxWTPPVGSRWDDDDGKDRWEGLTDSKS
D5AC36__________________MNKHSN-LELGRNDATPSADADPKSDSEGSDxWTPPVGSRWDDDDGKDRWEGLTDSET

SSRs (tot: 1)

Start position	End position	Sequence	Length
293	305	GAT GAT GAT GAT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain