SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11327

Length: 454 nt

UniGene Fasta

>biog2_v2.0_unigene11327
CGATGATCTGCTTATCCCTTCCTTCTCGCACAGCGGAGATACTCTGTTTGATGTGGATGCAGTGCATAGAATACTAGGGAATTTTTTACAGCAGGATGAGAATCAGGATGCGGTGGATTCAAACTTGGGTGGATACGGGTCTGATGGCCTGGCCGATTCTCCTTCTCAGGCTGCCATCATCAAAGTTGCCAAGCTGTTGGATAACTACCTGGCAGAAATAGCACCAGATGCAAATCTCAAGCTTTTGAAATTCATAGCCATTGCTGAATTGATGCCAGAGTATGCGCGTCCTGTGGACGATGGGTTGTATAGAGCTATTGATATCTACTTGAAGGCCCATCCCGGATTGACAGACATGGAACGCAGGAAGCTCTGCAAGATCATCGATTGCCAGAAGCTCTCCCAAGAAGCATGCTCACACGCAGCACAGAACGACCACCTCCCCGTCCAGCTG

Ace file of the UniGene biog2_v2.0_unigene11327

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10610	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phototropic-responsive NPH3 protein [Arabidopsis thaliana] sp\|Q9FKB6.1\|Y5880_ARATH RecName: Full=BTB/POZ domain-containing protein At5g48800 dbj\|BAB09433.1\| non-phototropic hypocotyl-like protein [Arabidopsis thaliana] gb\|AED95726.1\| Phototropic-responsiv	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	78%
Blast2go	response to light stimulus	GO:0009416	Biological Process	78%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3		IPR014778	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 151 - 648

Fln protein: DDLLIPSFSHSGDTLFDVDAVHRILGNFLQQDENQDAVDSNLGGYGSDGLADSPSQAAIIKVAKLLDNYLAEIAPDANLKLLKFIAIAELMPEYARPVDDGLYRAIDIYLKAHPGLTDMERRKLCKIIDCQKLSQEACSHAAQNDHLPVQL

Protein Length: 152

Fln nts: CGATGATCTGCTTATCCCTTCCTTCTCGCACAGCGGAGATACTCTGTTTGATGTGGATGCAGTGCATAGAATACTAGGGAATTTTTTACAGCAGGATGAGAATCAGGATGCGGTGGATTCAAACTTGGGTGGATACGGGTCTGATGGCCTGGCCGATTCTCCTTCTCAGGCTGCCATCATCAAAGTTGCCAAGCTGTTGGATAACTACCTGGCAGAAATAGCACCAGATGCAAATCTCAAGCTTTTGAAATTCATAGCCATTGCTGAATTGATGCCAGAGTATGCGCGTCCTGTGGACGATGGGTTGTATAGAGCTATTGATATCTACTTGAAGGCCCATCCCGGATTGACAGACATGGAACGCAGGAAGCTCTGCAAGATCATCGATTGCCAGAAGCTCTCCCAAGAAGCATGCTCACACGCAGCACAGAACGACCACCTCCCCGTCCAGCTG

Fln Alignment:

biogeco2_mira_c7859___DDLLIPSFSHSGDTLFDVDAVHRILGNFLQQDENQDAVDSNLGGYGSDGLADSPSQAAIIKVAKLLDNYLAEIAPDANLKLLKFIAIAELMPEYARPVDDGLYRAIDIYLKAHPGLTDMERRKLCKIIDCQKLSQEACSHAAQNDHLPVQL
B8LPD8__________________DDLLIPSYSYTVETLYDIDCVQRILQHFMAGQQGAESTLVNPHGFEEGGFMGSPSMTPIMMVGKLVDGYLAEVAPDGNLKPAKFHSLADALPDYARLFDDGLYRAIDIYLKAHPWVTEEEREKICSIMDCQKLTLEACTHAAQNERLPLRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain