SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11194

Length: 340 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11194
GGAAACGAAAGAGCTGGAAATCGAAGATGAAGATGTACTTCGACGCGCAAATGAAGAAATTCATGGACAGGCAAGAAGCCTGGCTCCAGAAAGTTCTAGATACATTAGAACAAAGAGAGCAAGAAAGAGTTAGCAGAGAAGAAGCATGGAGACGTCAAGAAGCGGCTCGGTTGGAACGCGAGCACCAGCTCTGGTCCAACGAACGAGCCCGTGCGGCGACCTGCGATGCGGCATTTATTTCCGCTCTGCAGAAAATCACCGGGCAAAATCTACAGCTCCCGGAAATATTCACACTGCCGCCTCCTCAGAATAGCATGAATCCTGAAGCTCAGGACCAGCA

Ace file of the UniGene biog2_v2.0_unigene11194 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1475	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	trihelix DNA binding transcription factor [Arabidopsis thaliana] emb\|CAB82933.1\| GT2-like protein [Arabidopsis thaliana] gb\|AED90641.1\| trihelix DNA binding transcription factor [Arabidopsis thaliana]	-	-	39%
FL-Next	sp=Trihelix transcription factor GTL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	49%
Blast2go	protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C882

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 112 - 587

Fln protein: KRKSWKSKMKMYFDAQMKKFMDRQEAWLQKVLDTLEQREQERVSREEAWRRQEAARLEREHQLWSNERARAATCDAAFISALQKITGQNLQLPEIFTLPPPQNSMNPEAQDQ

Protein Length: 113

Fln nts: GGAAACGAAAGAGCTGGAAATCGAAGATGAAGATGTACTTCGACGCGCAAATGAAGAAATTCATGGACAGGCAAGAAGCCTGGCTCCAGAAAGTTCTAGATACATTAGAACAAAGAGAGCAAGAAAGAGTTAGCAGAGAAGAAGCATGGAGACGTCAAGAAGCGGCTCGGTTGGAACGCGAGCACCAGCTCTGGTCCAACGAACGAGCCCGTGCGGCGACCTGCGATGCGGCATTTATTTCCGCTCTGCAGAAAATCACCGGGCAAAATCTACAGCTCCCGGAAATATTCACACTGCCGCCTCCTCAGAATAGCATGAATCCTGAAGCTCAGGACCAGCA

Fln Alignment:

biogeco2_mira_c7704___KMKMYFDAQMKKFMDRQEAWLQKVLDTLXXXXXXXXXXXXXXXXXXXXXXXXEHQLWSNERARAATCDAAFISALQKITGQNLQLPEIFTLPPPQNSMNPEA
Q9C882__________________KMMELFEGLVRQVMQKQAAMQRSFLEALEKREQERLDREEAWKRQEMARLAREHEVMSQERAASASRDAAIISLIQKITGHTIQLPPSLSSQPPPPYQPPPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain