SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11040

Length: 277 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11040
GAAGACATCAGGGGAAGATGGTTCTCCTCTGTTGGAACTAAGTGGTTATAATCCTAAAAGACAAGAGTTTGATCCAGAGTATGACAATGATGCAGAATTGCCTTTGGCAGAGATGGAATTCAAGGATAATGATTCAGAAACAGACCATGAATTGAAGCTACGCATGTTGCGCATATATTTATCTAGGCTTGACGAACGAAAACGGCGAAAAGATTTTATATTGGAAAGAGACCTACTTCATTCTAGGCCCCTGGAGAAAATGCTTTCAAAGGAGGAA

Ace file of the UniGene biog2_v2.0_unigene11040 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene587	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	transcriptional adapter ada2-like	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	67%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Transcriptional adaptor 2	IPR016827	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A897

Fln msg: Distance to subject end: 221 aas, your sequence is shorter than subject: 92 - 506

Fln protein: KTSGEDGSPLLELSGYNPKRQEFDPEYDNDAELPLAEMEFKDNDSETDHELKLRMLRIYLSRLDERKRRKDFILERDLLHSRPLEKMLSKEE

Protein Length: 93

Fln nts: GAAGACATCAGGGGAAGATGGTTCTCCTCTGTTGGAACTAAGTGGTTATAATCCTAAAAGACAAGAGTTTGATCCAGAGTATGACAATGATGCAGAATTGCCTTTGGCAGAGATGGAATTCAAGGATAATGATTCAGAAACAGACCATGAATTGAAGCTACGCATGTTGCGCATATATTTATCTAGGCTTGACGAACGAAAACGGCGAAAAGATTTTATATTGGAAAGAGACCTACTTCATTCTAGGCCCCTGGAGAAAATGCTTTCAAAGGAGGAA

Fln Alignment:

biogeco2_mira_c7510___KTSGEDGSPLLELSGYNPKRQEFDPEYDNDAELPLAEMEFKDNDSETDHELKLRMLRIYLSRLDERKRRKDFILERDLLHSRPLEKMLSKEE
D5A897__________________KASGEDGPPLLELSGYNPKRQEFDPEYDDDAEKPLAEMEFKENDSETDHELKLRMLRIYLSRLNERKRRKDFILERDLLHSRPLDKILSKEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain