SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10999

Length: 562 nt

UniGene Fasta

>biog2_v2.0_unigene10999
AATTGTTCTAAATCGCAGGTCATCTGAAGATTATTCACCGAGACATCAAACCTTCAAATATTCTTCTGGACTCCAACTTCGAACCAAAGACTTTGGCATTGCAAAACTTGCTCCAGAAGGTTCTCATGTCCGTACGCTCCCTCACGGGACCATTGGGTATTTGGATCCAGAAAGCTTCGCAACTGGGTTTGTTACAGACAAAACTGATGTTTACTCTTTTGGTGTCATGCTTCTTGAGTTGATCACTGGCCGCCGGGCTGTAGATCGAACTCGAGAATATCCAGAAAGTAGTCTAGTGGCTTCGGCACGGCGCGAGCTTGGTCAAGTAATAGAAAATGGCAATGGCAATCTGCGTGAGCTTGTTGATCCCCGCCTACGGAACTATACTTTGATAGAGATGATCAGGCTAATTGCATGTGCATATTATTGTGTTCAAGAATCTGAAACAAAGCGCCCTACTATGAAAAGGGTAGAGCTCCTTATTCCCGGTGAAAGTTCAAACTTATGGCATCATGAGGCTTTCTGGGGAGGTTTATAATGGACTAAACCAAAATAAGGAAAT

Ace file of the UniGene biog2_v2.0_unigene10999

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18594	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase [Oryza sativa Japonica Group]	-	-	3.00004e-41	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	receptor protein kinase	-	-	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Nucleoside diphosphate kinase	IPR001564	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 96 aas, your sequence is shorter than subject: 179 - 656

Fln protein: IVLNRRSSEDYSPRHQTFKYSSGLQLRTKDFGIAKLAPEGSHVRTLPHGTIGYLDPESFATGFVTDKTDVYSFGVMLLELITGRRAVDRTREYPESSLVASARRELGQVIENGNGNLRELVDPRLRNYTLIEMIRLIACAYYCVQESETKRPTMKRVELLIPGESSNLWHHEAFWGGL*

Protein Length: 180

Fln nts: AATTGTTCTAAATCGCAGGTCATCTGAAGATTATTCACCGAGACATCAAACCTTCAAATATTCTTCTGGACTCCAACTTCGAACCAAAGACTTTGGCATTGCAAAACTTGCTCCAGAAGGTTCTCATGTCCGTACGCTCCCTCACGGGACCATTGGGTATTTGGATCCAGAAAGCTTCGCAACTGGGTTTGTTACAGACAAAACTGATGTTTACTCTTTTGGTGTCATGCTTCTTGAGTTGATCACTGGCCGCCGGGCTGTAGATCGAACTCGAGAATATCCAGAAAGTAGTCTAGTGGCTTCGGCACGGCGCGAGCTTGGTCAAGTAATAGAAAATGGCAATGGCAATCTGCGTGAGCTTGTTGATCCCCGCCTACGGAACTATACTTTGATAGAGATGATCAGGCTAATTGCATGTGCATATTATTGTGTTCAAGAATCTGAAACAAAGCGCCCTACTATGAAAAGGGTAGAGCTCCTTATTCCCGGTGAAAGTTCAAACTTATGGCATCATGAGGCTTTCTGGGGAGGTTTATAATGGACTAAACCAAAATAAGGAAAT

Fln Alignment:

biogeco2_mira_c7458___EDYSPR--HQTFKYS-----SGLQLRTKDFGIAKLAPEG-SHVRTLPHGTIGYLDPESFATGFVTDKTDVYSFGVMLLELITGRRAVDRTREYPESSLVASARRELGQVIENGNGNLRELVDPRLR-NYTLIEMIRLIACAYYCVQESETKRPTMKRVELLIPGESS
C0PRI9__________________EDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVSTRVMGTFGYLAPEYASSGKLTDRSDVFSFGVMLLELITGRRPVDTTPSFAEDSLVDWARPLLARAME--DGNLDALVDPRIQNNYNLNEMMRVVACAASSVRHSARRRPRMGQIVRVLEGDVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain