SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10973

Length: 374 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10973
CTTGGACACAGGACGAAGACCTTCGCTTGACTCAGTTTGTACGAGCTCATGGTGAAGGATGCTGGTCTGCTCTAGCTAAGAAGGCAGGTCTGAAGCGCTGTGGAAAGAGTTGCAGGTTTCGTTGGGTGAACTATCTTCGACCAAACCTCAAACGTGGTAAATTTTCACCGGAAGAAGACGACCTTATAATAAGACTTCATAAACTTCTGGGAAACCGGTGGTCATTAATTGCCGGTCGTATACCGGGTAGAACTGATAACGAAGTCAAGAACTACTGGAATACTCGTTTGAGCAAGAAAGCTCAATTGAATTGCAGGAGACCAACGGAGCCAAATAGCAAGGAACCGGCTGTGAGTATTATTCCTGCAACAAGT

Ace file of the UniGene biog2_v2.0_unigene10973 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene70246	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7STW5_VITVI	-	-	3.99931e-42	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	transcription factor	-	-	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXX6

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 124 - 242

Fln protein: WTQDEDLRLTQFVRAHGEGCWSALAKKAGLKRCGKSCRFRWVNYLRPNLKRGKFSPEEDDLIIRLHKLLGNRWSLIAGRIPGRTDNEVKNYWNTRLSKKAQLNCRRPTEPNSKEPAVSIIPATS

Protein Length: 125

Fln nts: CTTGGACACAGGACGAAGACCTTCGCTTGACTCAGTTTGTACGAGCTCATGGTGAAGGATGCTGGTCTGCTCTAGCTAAGAAGGCAGGTCTGAAGCGCTGTGGAAAGAGTTGCAGGTTTCGTTGGGTGAACTATCTTCGACCAAACCTCAAACGTGGTAAATTTTCACCGGAAGAAGACGACCTTATAATAAGACTTCATAAACTTCTGGGAAACCGGTGGTCATTAATTGCCGGTCGTATACCGGGTAGAACTGATAACGAAGTCAAGAACTACTGGAATACTCGTTTGAGCAAGAAAGCTCAATTGAATTGCAGGAGACCAACGGAGCCAAATAGCAAGGAACCGGCTGTGAGTATTATTCCTGCAACAAGT

Fln Alignment:

biogeco2_mira_c7420___WTQDEDLRLTQFVRAHGEGCWSALAKKAGLKRCGKSCRFRWVNYLRPNLKRGKFSPEEDDLIIRLHKLLGNRWSLIAGRIPGRTDNEVKNYWNTRLSKK
A9NXX6__________________WTKEEDDRLIQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain