SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10697

Length: 978 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene10697

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2951	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	minichromosomal maintenance factor [Triticum aestivum]	-	-	73%
FL-Next	tr=DNA replication licensing factor MCM2, putative, expressed; Oryza sativa subsp. japonica (Rice).	-	-	62%
Blast2go	minichromosome maintenance protein 2	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	DNA unwinding involved in replication	GO:0006268	Biological Process	85%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	85%
Blast2go	regulation of cell proliferation	GO:0042127	Biological Process	85%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	85%
Blast2go	embryo development	GO:0009790	Biological Process	85%
Blast2go	DNA binding	GO:0003677	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	Mini-chromosome maintenance, conserved site	IPR018525	-	-
Sma3	Mini-chromosome maintenance complex protein 2	IPR008045	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: Q2R482

Fln msg: Distance to subject end: 613 aas, your sequence is shorter than subject: 297 - 961

Fln protein: MDSDPSTPGSPTSGPGFSTDRLPPTSSSRHRSSTQSISDEAEVDPDILGEDPGDEEDEGEGEDLYNDNFIQQDYQRLEGQDRYESVDLDDEYQDERGYDEIMADRRAAEVELDARHGVSVNRKLPRILRDQDTDDEIEFRPRRRARVEPPVTDQTEEEPYEEEEDEEGEYEMYNVQGTLREWVTRDEVRRFIAKKFRQFLLSYVNQRSGNGEREYIRLINEMVAANKCSLEIDYKQFIFTHPNIAIWLADAPQSVLEVMEEVALNVVLNLHPNYRNIHDKIYVRITNLPVYDQIRNI

Protein Length: 298

Fln nts: ATGGGATGCATTAGCTGACTATCTGAGATCAATTCCTTCCCATCTTTCTCAGAAGGCCGCCGCTCAGCTTCTTAGAGTTCGAAGTC_-_ATGGATTCCGATCCTTCAACACCTGGGTCTCCGACGTCTGGACCAGGGTTTAGTACCGATCGTCTTCCTCCAACAAGCAGCTCACGCCATAGAAGCTCGACACAGTCAATATCTGATGAAGCGGAAGTTGATCCGGACATTTTGGGAGAAGATCCGGGCGATGAAGAGGACGAAGGAGAGGGGGAGGATCTTTACAATGATAACTTTATTCAGCAAGATTACCAGCGTCTAGAAGGCCAAGATCGGTACGAGTCTGTGGACTTGGACGATGAATACCAAGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGTTGAGCTTGATGCAAGGCATGGTGTTAGTGTGAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAATAGAGTTTAGGCCACGGCGAAGGGCACGTGTTGAGCCTCCAGTTACTGACCAAACTGAAGAGGAGCCTTATGAGGAGGAAGAAGACGAAGAGGGTGAATATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTTCGGCGTTTCATAGCCAAAAAGTTCAGACAGTTTTTACTCAGCTATGTGAACCAAAGAAGTGGAAATGGTGAACGTGAATATATTCGGCTGATCAATGAGATGGTTGCTGCAAACAAGTGTAGCTTGGAGATTGATTATAAGCAGTTCATCTTTACACATCCAAACATTGCCATCTGGCTAGCTGATGCCCCTCAATCCGTGCTTGAAGTGATGGAAGAAGTGGCTTTAAATGTTGTGTTGAATCTACATCCAAATTATAGAAACATTCATGATAAAATCTATGTTCGAATTACAAATCTGCCAGTTTATGATCAGATACGTAATATAA

Fln Alignment:

biogeco2_mira_c7057___YNDNFIQQDYQRLEGQDRYESVDLDDEYQDERGYDEIMADRRAAEVELDARH---GVSVNRKLPRILRDQDTDDXXXXXXXXXXXXXXX------------------------------------VTDQTXXXXXXXXXXXXXXXXXXNVQGTLREWVTRDEVRRFIAKKFRQFLLSYVNQRSGNGEREYIRLINEMVAANKCSLEIDYKQFIFTHPNIAIWLADAPQSVLEVMEEVALNVVLNLHPNYRNIHDKIYVRITNLPVYDQIRNI
Q2R482__________________FNDNYLD-DYRRMDEQDQYESVGLDDSIEDERNLDEIMADRRAAEAELDARDVRTGAAPDRKLPRMLHDQDTDEDMSFRRPKRHRANFRPPREPRTPRSDDDGDGATPSSPGRSQRGMYSGGDVPMTDQTDDDPYEDEFDEEDEMNMYRVQGTLREWVTRDEVRRFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEEVAKNVVFDLHKNYRNIHQKIYVRITNLPVYDQIRNI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
416		33		66	0.997476
525			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain