SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10480

Length: 387 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10480
TTTACTATTGATGGGAGAGTGTGAATAATTTTCTTGAAACATTTTCTGATTCCCTGCCAGAGGAACAAGCATCATCACTGTTATTGGTGATATGGAAATGATAGATGCTGGCGATAGCAAATTGCCTTGGAAGAAGCAAAATCATCCATTGTATTGCTGCGTGACACTATCACTCCTGGCAGAAATTATTAATTCTAGGCTTTTTACAACAGTAAGAGATACTTTAGGCTTAACTTACGATGTTTCCTTTGAGCTGAGCCTTTTGGATAGGCTGAAATTTGGATGGTTTGTTATTTCAGTAACTTCGACGCCAGCCAAAGTTTACAGAGCTGTGGATGCATGTAAAAGTGTTCTAAGAGGGCTACATGGTAACAAGATAACTCAGAG

Ace file of the UniGene biog2_v2.0_unigene10480 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1179	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain	-	-	6.0e-19	21%
FL-Next	tr=Chloroplast processing enzyme; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Blast2go	protein	-	-	0.0	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	metal ion binding	GO:0046872	Molecular Function	75%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	75%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: O48870

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 118 aas, your sequence is shorter than subject: 128 - 1265

Fln protein: LLLMGECE*FS*NIF*FPARGTSIITVIGDMEMIDAGDSKLPWKKQNHPLYCCVTLSLLAEIINSRLFTTVRDTLGLTYDVSFELSLLDRLKFGWFVISVTSTPAKVYRAVDACKSVLRGLHGNKITQ

Protein Length: 129

Fln nts: TTTACTATTGATGGGAGAGTGTGAATAATTTTCTTGAAACATTTTCTGATTCCCTGCCAGAGGAACAAGCATCATCACTGTTATTGGTGATATGGAAATGATAGATGCTGGCGATAGCAAATTGCCTTGGAAGAAGCAAAATCATCCATTGTATTGCTGCGTGACACTATCACTCCTGGCAGAAATTATTAATTCTAGGCTTTTTACAACAGTAAGAGATACTTTAGGCTTAACTTACGATGTTTCCTTTGAGCTGAGCCTTTTGGATAGGCTGAAATTTGGATGGTTTGTTATTTCAGTAACTTCGACGCCAGCCAAAGTTTACAGAGCTGTGGATGCATGTAAAAGTGTTCTAAGAGGGCTACATGGTAACAAGATAACTCAGAG

Fln Alignment:

biogeco2_mira_c6689___EMIDAGDSKLPWKKQNHPLYCCVTLSLLAEIINSRLFTTVRDTLGLTYDVSFELSLLDRLKFGWFVISVTSTPAKVYRAVDACKSVLRGLHGNKI
O48870__________________QLLEGGDRELQKKLRAHPLFFGVTMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSTPGKVYKAVDACKNVLRGLHSNQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain