SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10443

Length: 518 nt

UniGene Fasta

>biog2_v2.0_unigene10443
ATGGGGATAGAAATGGAGTACGAGAGAACAGAAAATGGGAAAGAAAGCAGCACGAATTGCATGTGTATATCCATCTGCATCTTTCTATCCATCAGTTACAGAGTCTCTTAAAACCCCTTTTAGGGGCACATTACGGGATGGTATGCAAGTAGAAGTGGGCGTTTAGGTTTTGGCAGCAGGAATTCTGTCGTGGCAGTGAAAATAATTTCACGGCTTCAGTAGATGGGGGCTCCAAAGCAGAAATGGACACATGAAGAGGAGGCTGCTCTTAGGGCTGTGGTGGAGAAATACGGACCTGGTAAATGGCGTGCTATTCTGAGAGATCCCATATTAAGCTCGTGCTTGTCATCACGGTCTAATGTTGATCTGAAGGATAAATGGCGGAATATGAGTGTTACTGCAAATGGTTGGGGTTCAAGGGAAAAGGCAAGACTGGCACTCAAAAGAAGCAAATACATTGCAAAGCAATCTGGCAGGCAACTTGCACTTAGTGCATTAAGCAATGGAAATATGGATGT

Ace file of the UniGene biog2_v2.0_unigene10443

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3843	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-binding protein PcMYB1, putative [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	telomere repeat binding factor 1	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	65%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	65%
Blast2go	response to salt stress	GO:0009651	Biological Process	65%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	65%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	65%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	65%
Blast2go	nucleosome assembly	GO:0006334	Biological Process	65%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	65%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	65%
Blast2go	double-stranded telomeric DNA binding	GO:0003691	Molecular Function	65%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	65%
Blast2go	nucleosome	GO:0000786	Cellular Component	65%
Blast2go	nucleus	GO:0005634	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR63

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 98 - 298

Fln protein: MGAPKQKWTHEEEAALRAVVEKYGPGKWRAILRDPILSSCLSSRSNVDLKDKWRNMSVTANGWGSREKARLALKRSKYIAKQSGRQLALSALSNGNMD

Protein Length: 99

Fln nts: ATGGGGATAGAAATGGAGTACGAGAGAACAGAAAATGGGAAAGAAAGCAGCACGAATTGCATGTGTATATCCATCTGCATCTTTCTATCCATCAGTTACAGAGTCTCTTAAAACCCCTTTTAGGGGCACATTACGGGATGGTATGCAAGTAGAAGTGGGCGTTTAGGTTTTGGCAGCAGGAATTCTGTCGTGGCAGTGAAAATAATTTCACGGCTTCAGTAG_-_ATGGGGGCTCCAAAGCAGAAATGGACACATGAAGAGGAGGCTGCTCTTAGGGCTGTGGTGGAGAAATACGGACCTGGTAAATGGCGTGCTATTCTGAGAGATCCCATATTAAGCTCGTGCTTGTCATCACGGTCTAATGTTGATCTGAAGGATAAATGGCGGAATATGAGTGTTACTGCAAATGGTTGGGGTTCAAGGGAAAAGGCAAGACTGGCACTCAAAAGAAGCAAATACATTGCAAAGCAATCTGGCAGGCAACTTGCACTTAGTGCATTAAGCAATGGAAATATGGATGT

Fln Alignment:

biogeco2_mira_c6634___MGAPKQKWTHEEEAALRAVVEKYGPGKWRAILRDPILSSCLSSRSNVDLKDKWRNMSVTANGWGSREKARLALKRSKYIAKQSGRQLALSALSNGNMD
B8LR63__________________MGAPKQKWTHEEEAALRTGVEKYGPGKWRAILRDPSLSLCLASRSNVDLKDKWRNMSVTANGWGSREKARLALKRSKYIAKQSGRQLALSALSNGNMD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
123	66			33	0.997454
149	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain