SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10364

Length: 549 nt

UniGene Fasta

>biog2_v2.0_unigene10364
ATGGGGTTCTCAGGACAGAGAAATTGGTGAATGATATGTACCAGAACATATTTACAATGATACATCATTATCATGCAGCTTTGGCCAAAGCTGTTTACGTTGTCATGGAAATGCAGGAGATCACAGGTGATGACCTTGATGTCATAATTGATCAATATCCAGCAGATACTCCTGTGCATCTTGTAGAAGAAGAGGAAAATCCAGGAAGCTTGCCTCCAAGGGATGGAATTCAGCAAATGGTTCCTTTGGGTACATCGGATTCATCAGCTATATCCTGGAAGAAGACGAGTCATGAAGAAGAGACGCTTAGCTCCAAGAGCGTTAATTAGGACTTACGTAGTCCTTGCATTGTTATCTGTTTTTCATCTTTTGAACATGCATTGGAAAGCAGATGTGATTGGTTGACTGCCCTNAAAGATAATCTGGAGAGTGAAATGCAGAGTGCAATGAGTGATTATGTGAAGAGAATGGAAGGGCAAGAATTTTGCTAGGAAATTTTCATCTGGGACACGAAGAATTTCGTTGCACTTGTGTCTTGTTACAGGCAAG

Ace file of the UniGene biog2_v2.0_unigene10364

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1532	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	FtsH extracellular protease [Arabidopsis thaliana] gb\|AAB63626.1\| cell division protein isolog [Arabidopsis thaliana] emb\|CAB43894.1\| cell division protein-like [Arabidopsis thaliana] emb\|CAB81312.1\| cell division protein-like [Arabidopsis thaliana] gb\|AE	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	51%
Blast2go	cell division protein	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	66%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	cell division	GO:0051301	Biological Process	66%
Blast2go	proteolysis	GO:0006508	Biological Process	66%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	66%
Blast2go	ATP binding	GO:0005524	Molecular Function	66%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7UB46

Fln msg: your sequence is shorter than subject: 109 - 907

Fln protein: GVLRTEKLVNDMYQNIFTMIHHYHAALAKAVYVVMEMQEITGDDLDVIIDQYPADTPVHLVEEEENPGSLPPRDGIQQMVPLGTSDSSAISWKKTSHEEETLSSKSVN*

Protein Length: 110

Fln nts: ATGGGGTTCTCAGGACAGAGAAATTGGTGAATGATATGTACCAGAACATATTTACAATGATACATCATTATCATGCAGCTTTGGCCAAAGCTGTTTACGTTGTCATGGAAATGCAGGAGATCACAGGTGATGACCTTGATGTCATAATTGATCAATATCCAGCAGATACTCCTGTGCATCTTGTAGAAGAAGAGGAAAATCCAGGAAGCTTGCCTCCAAGGGATGGAATTCAGCAAATGGTTCCTTTGGGTACATCGGATTCATCAGCTATATCCTGGAAGAAGACGAGTCATGAAGAAGAGACGCTTAGCTCCAAGAGCGTTAATTAG___GACTTACGTAGTCCTTGCATTGTTATCTGTTTTTCATCTTTTGAACATGCATTGGAAAGCAGATGTGATTGGTTGACTGCCCTaAAAGATAATCTGGAGAGTGAAATGCAGAGTGCAATGAGTGATTATGTGAAGAGAATGGAAGGGCAAGAATTTTGCTAGGAAATTTTCATCTGGGACACGAAGAATTTCGTTGCACTTGTGTCTTGTTACAGGCAAG

Fln Alignment:

biogeco2_mira_c6504___RTEKLVNDMYQNIFTMIHHYHAALAKAVYVVMEMQEITGDDLDVIIDQYPADTPVHLVEEEENPGSLP
D7UB46__________________RTEELISDMYGKTLTLLRRHHAALLKTVKVLVEQKEISGEEIDFILNSYPPQTPVSCLLEEENPGSLP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
254		66		33	0.997457
255	66		33		0.997452
256			33	66	0.997452
257		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain