SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10341

Length: 280 nt

UniGene Fasta

>biog2_v2.0_unigene10341
ATGGGGGGCTTCCAAGTGTCCTGTTTTTCTTCGAGGCAGCGGAGTTCGTTTTTTGATTTTTCAAATATTTGTAGTGAAAATATAGAAGGAACGCGAAGTGCAGAGGGGATGCCAACAAACGCAGTGCAGACGCTCTTCGAGCTTTGCAGGAAGACCTTCTCGCCTGCTGGACCTTCTCCTTCACCGCAGGCCATACAAAAACTGCGCTCTGTTCTAGATACTTTTAGGCCTACTGATGTGGGCTTAATGAGGATACATTGGAACAAGATCGTGGGTATGG

Ace file of the UniGene biog2_v2.0_unigene10341

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1705	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1637 domain containing protein	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	2-aminoethanethiol dioxygenase-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	HGWP repeat	IPR005213	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Cysteamine dioxygenase	IPR012864	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Y5

Fln msg: Overlapping hits, possible frame ERROR between 246 and 240, Distance to subject end: 194 aas, your sequence is shorter than subject: 93 - 275

Fln protein: MGGFQVSCFSSRQRSSFFDFSNICSENIEGTRSAEGMPTNAVQTLFELCRKTFSPAGPSPSPQAIQKLRSVLDTFRPTDxxxxEDTLEQDRGY

Protein Length: 94

Fln nts: _-_ATGGGGGGCTTCCAAGTGTCCTGTTTTTCTTCGAGGCAGCGGAGTTCGTTTTTTGATTTTTCAAATATTTGTAGTGAAAATATAGAAGGAACGCGAAGTGCAGAGGGGATGCCAACAAACGCAGTGCAGACGCTCTTCGAGCTTTGCAGGAAGACCTTCTCGCCTGCTGGACCTTCTCCTTCACCGCAGGCCATACAAAAACTGCGCTCTGTTCTAGATACTTTTAGGCCTACTGATxxxxxxxxxxxxGAGGATACATTGGAACAAGATCGTGGGTATGG

Fln Alignment:

biogeco2_mira_c6472___NAVQTLFELCRKTFSPAG-PSPSPQAIQKLRSVLDTFRPTDVxxNEDTLEQDRGY
D5A9Y5__________________SAVQNLYEVCNETFSSSAVPVPPQRAIQRLRSVLDTIKPVDVxxNEDVFENDHGY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain