SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10337

Length: 483 nt

UniGene Fasta

>biog2_v2.0_unigene10337
ATGGGGAAATCAATCTTCAGGATCTGCAGGGCAATCTGCTAATCATGGTTCTCAGCCAGGGCTTCCTAGTGTATATGGAGCTACTGTTGGTCAGCCCATTGCTGGGCCTATGGTTTCTGCTGTTGGCACTCCTGTAATGCTTCCTCCGGGACATGCTCCTTATGTTGTTCCAGTTGCTTACCCTATGCCACAGCCGCCAACTATGCATAGATAACTAGAGAGAAGGAGCTGAACACTTTGGACTGCAAAGCTTCATTTGATAATATGTTTGTTGTCATCGTATCAATAGGAAATGATGCATGTCAACTGATCTTCTAAATGCTGATCAGTTGGTGTGTCATTGCTCAATATGCACCTTTTCCTGTGTGGTATGAAAGAGATCATTTCTTCCTCCACTAAAGTTGCCAAAGTGGAGGACGTTAATTTCTTGCAAAGAATGATTTGATGGTTGCGAAGAATGATTTTGATTGGGAGACGTGTAAG

Ace file of the UniGene biog2_v2.0_unigene10337

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17823	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	MYBR domain class transcription factor n=2 Tax=Malus x domestica RepID=D9ZJ78_MALDO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	mybr domain class transcription factor	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3		IPR015609	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKB7

Fln msg: your sequence is shorter than subject: 71 - 270

Fln protein: WGNQSSGSAGQSANHGSQPGLPSVYGATVGQPIAGPMVSAVGTPVMLPPGHAPYVVPVAYPMPQPPTMHR*

Protein Length: 72

Fln nts: ATGGGGAAATCAATCTTCAGGATCTGCAGGGCAATCTGCTAATCATGGTTCTCAGCCAGGGCTTCCTAGTGTATATGGAGCTACTGTTGGTCAGCCCATTGCTGGGCCTATGGTTTCTGCTGTTGGCACTCCTGTAATGCTTCCTCCGGGACATGCTCCTTATGTTGTTCCAGTTGCTTACCCTATGCCACAGCCGCCAACTATGCATAGATAA___CTAGAGAGAAGGAGCTGAACACTTTGGACTGCAAAGCTTCATTTGATAATATGTTTGTTGTCATCGTATCAATAGGAAATGATGCATGTCAACTGATCTTCTAAATGCTGATCAGTTGGTGTGTCATTGCTCAATATGCACCTTTTCCTGTGTGGTATGAAAGAGATCATTTCTTCCTCCACTAAAGTTGCCAAAGTGGAGGACGTTAATTTCTTGCAAAGAATGATTTGATGGTTGCGAAGAATGATTTTGATTGGGAGACGTGTAAG

Fln Alignment:

biogeco2_mira_c6468___PGLPSVYGATVGQPIAGPMVSAVGTPVML
B8LKB7__________________PGIPSVYGATVGQPIAGPMVSAVGTPVML

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
172	66		33		0.997452
368		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain