SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10316

Length: 553 nt

UniGene Fasta

>biog2_v2.0_unigene10316
TACATGGCTGAAGCCTTAAATAGATACAATATCCTGTATGCCCACTGTGTAGAGCCCAGACTCGTAACTTCATTTGAATCTGTTGCAACAGACAAGAGTCTGTTTCCAATGAGGAAGGCATTCAAGGGATCATTCTTGGTTGCAGGCGGTTATGGTAGAGAAGATGGAAATGAAGCAATTGCAAGTGGTAAGGCTGATCTTGTAGTTTACGGTCGAATTTTTCTGGCGAACCCAGATTTGCCTAGAAGATTTGAGTTAAATGCTCCCCTCAACAAATATGACAGAAACACGTTTTACAGTTCTGATCCTGTAGTTGGTTACACAGACTATCCATTCCTGGAGTGAACTATCGATTTATTGTTGCTCCAACGTCATCCAATAACATGTATGTATGGATGGATATGGATAAGGGCAAGGGCTAACGAGCCCGGCCGCTTAGCTGTAAGCTCGATAGCCATTTAAAACAGACACTTGTGGTGTTTTGGGAACACTCCATTCTCACTGAAAATTANATGGCTATCGAATTTACAGCTACACAAGCATTAGCAAGTTC

Ace file of the UniGene biog2_v2.0_unigene10316

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31118	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	12-oxophytodienoate reductase 2 [Arabidopsis thaliana] sp\|Q8GYB8.2\|OPR2_ARATH RecName: Full=12-oxophytodienoate reductase 2; AltName: Full=12-oxophytodienoate-10,11-reductase 2; Short=AtOPR2; Short=OPDA-reductase 2 gb\|AAF04449.1\|AC010718_18 12-oxophytodie	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	12-oxophytodienoate reductase	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	0.0	84%
Blast2go	lipid biosynthetic process	GO:0008610	Biological Process	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P127

Fln msg: your sequence is shorter than subject: 115 - 376

Fln protein: YMAEALNRYNILYAHCVEPRLVTSFESVATDKSLFPMRKAFKGSFLVAGGYGREDGNEAIASGKADLVVYGRIFLANPDLPRRFELNAPLNKYDRNTFYSSDPVVGYTDYPFLE*

Protein Length: 116

Fln nts: TACATGGCTGAAGCCTTAAATAGATACAATATCCTGTATGCCCACTGTGTAGAGCCCAGACTCGTAACTTCATTTGAATCTGTTGCAACAGACAAGAGTCTGTTTCCAATGAGGAAGGCATTCAAGGGATCATTCTTGGTTGCAGGCGGTTATGGTAGAGAAGATGGAAATGAAGCAATTGCAAGTGGTAAGGCTGATCTTGTAGTTTACGGTCGAATTTTTCTGGCGAACCCAGATTTGCCTAGAAGATTTGAGTTAAATGCTCCCCTCAACAAATATGACAGAAACACGTTTTACAGTTCTGATCCTGTAGTTGGTTACACAGACTATCCATTCCTGGAGTGA___ACTATCGATTTATTGTTGCTCCAACGTCATCCAATAACATGTATGTATGGATGGATATGGATAAGGGCAAGGGCTAACGAGCCCGGCCGCTTAGCTGTAAGCTCGATAGCCATTTAAAACAGACACTTGTGGTGTTTTGGGAACACTCCATTCTCACTGAAAATTAaATGGCTATCGAATTTACAGCTACACAAGCATTAGCAAGTTC

Fln Alignment:

biogeco2_mira_c6433___YMAEALNRYNILYAHCVEPRLVTSFESVATDKSLFPMRKAFKGSFLVAGGYGREDGNEAIASGKADLVVYGRIFLANPDLPRRFELNAPLNKYDRNTFYSSDPVVGYTDYPFLE
A9P127__________________YMAEALNRYNILYAHYVEPRLVTTFEPVATNKSLFPMRKAFKGSFLVAGGYGREDGNEAISSGKADLVVYGRIFLANPDLPKRFELNAPLNKYDRNTFYSPDPVVGYTDYPFLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain