SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10062

Length: 227 nt

UniGene Fasta

>biog2_v2.0_unigene10062
ATGGGGCTCCTCCTCGACCTGAAGCCTGCCACAGCAAATTTGAACTCCTGAGACGTCTCACTGCATCGATATCCGATATCCGAGATGGATGCTTTGAAGCAGTCCCAGTTGCCCTAAATGTTCAGTACGCATCATTCGCGAGAGCTGTTCAGAAGGTGGGAAGCGGAGCAACTTCTCACAGACCACTATTTAAATCTTCCCTTATAAGGGTAGGTTGTCTAGGATCG

Ace file of the UniGene biog2_v2.0_unigene10062

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10175	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase delta chain, chloroplastic n=1 Tax=Spinacia oleracea RepID=ATPD_SPIOL	-	-	1.96182e-44	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	70%
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	70%
Blast2go	photosynthetic electron transport in photosystem I	GO:0009773	Biological Process	70%
Blast2go	response to cold	GO:0009409	Biological Process	70%
Blast2go	photosynthetic electron transport in photosystem II	GO:0009772	Biological Process	70%
Blast2go	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	70%
Blast2go	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	70%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	70%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	70%
Blast2go	plastoglobule	GO:0010287	Cellular Component	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%
Blast2go	stromule	GO:0010319	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTG2

Fln msg: Distance to subject end: 208 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 75 - 256

Fln protein: GAPPRPEACHSKFELLRRLTASISDIRDGCFEAVPVALNVQYASFARAVQKVGSGATSHRPLFKSSLIRVGCLGS

Protein Length: 76

Fln nts: _-_ATGGGGCTCCTCCTCGACCTGAAGCCTGCCACAGCAAATTTGAACTCCTGAGACGTCTCACTGCATCGATATCCGATATCCGAGATGGATGCTTTGAAGCAGTCCCAGTTGCCCTAAATGTTCAGTACGCATCATTCGCGAGAGCTGTTCAGAAGGTGGGAAGCGGAGCAACTTCTCACAGACCACTATTTAAATCTTCCCTTATAAGGGTAGGTTGTCTAGGATCG

Fln Alignment:

biogeco2_mira_c6027___PVALNVQYASFARAVQKVGSGATSHRPLFKSSLIRVG
A9NTG2__________________PMALNVQCAPFVKAVQKVGSGASSHRPSFKSSLIRIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain