SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10016

Length: 260 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10016
ATGGGGTAACGATGCACCGGGTGTTAATTTGGTAAATGAATATCTTGCTGGAGCAGGTACTGATGCTCCTGAAGTAGAGGAAGAGAATATAACCTCTCGACCATCTGTCAATTACAATGATATCTGGGCGAAATCTCTTTTGGAAGCATCAGATGGGGAGGAAGATGATGCACGATCATCTGGGGCTTCCTCACCTGAATCAACTGCATCATTTGAAACTTCGGCTTCCTCTCAGTTCCATTATCCTTCATTGTTCAGCT

Ace file of the UniGene biog2_v2.0_unigene10016 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1259	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	SH3 domain-containing protein [Arabidopsis thaliana] gb\|AAP04158.1\| unknown protein [Arabidopsis thaliana] dbj\|BAD93870.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06049.1\| SH3 domain-containing protein [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	73%
Blast2go	sh3 domain-containing protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	76%
Blast2go	cytosol	GO:0005829	Cellular Component	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Src homology-3 domain	IPR001452	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SWB0

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 86 - 1214

Fln protein: WGNDAPGVNLVNEYLAGAGTDAPEVEEENITSRPSVNYNDIWAKSLLEASDGEEDDARSSGASSPESTASFETSASSQFHYPSLFS

Protein Length: 87

Fln nts: ATGGGGTAACGATGCACCGGGTGTTAATTTGGTAAATGAATATCTTGCTGGAGCAGGTACTGATGCTCCTGAAGTAGAGGAAGAGAATATAACCTCTCGACCATCTGTCAATTACAATGATATCTGGGCGAAATCTCTTTTGGAAGCATCAGATGGGGAGGAAGATGATGCACGATCATCTGGGGCTTCCTCACCTGAATCAACTGCATCATTTGAAACTTCGGCTTCCTCTCAGTTCCATTATCCTTCATTGTTCAGCT

Fln Alignment:

biogeco2_mira_c5948___WGNDAPGVNLVNEYLAGAGTDAPEVEEENITSRPSVNYNDIWAKSLLEASDGEEDDXXXXXXXXXXXXXXXXXXXXSQF---HYPSLFS
D7SWB0__________________WGKNAPAMNRVNEFLAGAGTDAPDVEEENIISRPSVSYDDLWAKTLLETSEMEEDDARSSGTSSPESTGSVETSISSHFGGMNYPSLFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain