SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene10005

Length: 470 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene10005
ATGGGGGTTCGGCTGGCGCTTTCGATCCTCCAACCTCCTTAAGCCTGTCGCTGCCTGGAAGCGCTTCTTCAAGCGAGAATAACAGCAGTGGAGAATGCAGCCCCACAGAACAGAGCTCTGAAATGAAATATGCAAAGTTTCAGGCTTATCAACAACCGACTGGTTATTCGTTTGCCAATCCGTTTCCTGTTGGTGGCTACATGAAGACAGAGGAGGCCATGGCTATGATGTCGACTGCAGTCAAAATTGCAATCGGGCAAGCACTGCCTCTAATTTTCCAGCTGCCGAGCGGTAATTCCCAAGAAGGATGTTCGGGCGATTCTGCTAATTATGGTGGAAGTTTGCTGTCTATTATGCGGGAGATGATCGCGAAGGAGGTCCAGAGTTATACTAACGGATCGCCGTGTTCAAATCAGGGGTCCGGCATGGATTCTGTAGCTCCGGCGTACAGAGAAGTAGGCTTAATGCTG

Ace file of the UniGene biog2_v2.0_unigene10005 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17401	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB9 n=2 Tax=Picea RepID=A5JYF3_PICGL	-	-	73%
FL-Next	tr=R2R3-MYB transcription factor MYB9; Picea glauca (White spruce) (Pinus glauca).	-	-	85%
Blast2go	r2r3-myb transcription factor myb7	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	SANT/Myb domain	IPR001005	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A5JYF3

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 156 - 416

Fln protein: GGSAGAFDPPTSLSLSLPGSASSSENNSSGECSPTEQSSEMKYAKFQAYQQPTGYSFANPFPVGGYMKTEEAMAMMSTAVKIAIGQALPLIFQLPSGNSQEGCSGDSANYGGSLLSIMREMIAKEVQSYTNGSPCSNQGSGMDSVAPAYREVGLML

Protein Length: 157

Fln nts: ATGGGGGTTCGGCTGGCGCTTTCGATCCTCCAACCTCCTTAAGCCTGTCGCTGCCTGGAAGCGCTTCTTCAAGCGAGAATAACAGCAGTGGAGAATGCAGCCCCACAGAACAGAGCTCTGAAATGAAATATGCAAAGTTTCAGGCTTATCAACAACCGACTGGTTATTCGTTTGCCAATCCGTTTCCTGTTGGTGGCTACATGAAGACAGAGGAGGCCATGGCTATGATGTCGACTGCAGTCAAAATTGCAATCGGGCAAGCACTGCCTCTAATTTTCCAGCTGCCGAGCGGTAATTCCCAAGAAGGATGTTCGGGCGATTCTGCTAATTATGGTGGAAGTTTGCTGTCTATTATGCGGGAGATGATCGCGAAGGAGGTCCAGAGTTATACTAACGGATCGCCGTGTTCAAATCAGGGGTCCGGCATGGATTCTGTAGCTCCGGCGTACAGAGAAGTAGGCTTAATGCTG

Fln Alignment:

biogeco2_mira_c5932___GSAGAFDPPTXXXXXXXXXXXXXXXXXXXXXXPTEQSSEMKYAKFQAYQQPTGYSFANPFPVGGYMKTEEAMAMMSTAVKIAIGQALPLIFQLPSGNSQEGCSGDSANYGGSLLSIMREMIAKEVQSYTNGSPCSNQGSGMDSVAPAYREVGLML
A5JYF3__________________GSAGAFDPPTSLSLSLPGSGSFSENNSSGECSPIEQSFETKSAKFQAYQQQTGYSFADPFPVSGYLKTEEAMAMMSTAVKIAIGQALPLIFQLSSGNSHGGCSGDSSNFGGSLLSIMREMIAKEVQNYTNGSQCSNQGPGLNSVAPVFREVGLML

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
281	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain