SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9942

Length: 349 nt

UniGene Fasta

>biog2_v2.0_unigene9942
GGTCAGTTGGAATTGTTGAAAAAGCAATCTTGCGTTGGAGGCGTAAGCGAGTTGGATTACGTGGTTTCCGGGCAGAGGCAACAATAGCAGATTCAGAGTCACAAGGGAAAAGTGATGAGTATGATTTTCTGCGAGTAGGTAGAAAGCAGACAGTGGCCGGTGTAGAAAAGGCTCTTGCACGGGTGCAGTCTATGGTCCGTTATCCGGAAGCACGAGATCAATATCGGCGGCTGGTGACAAATTTCCAGAAAATCAAGGTTGGTATGGGACAGATTACAGATGGTGGTGACTCCCAGCAGGAGAAAGAGAACAAGACAAATGAAAATGATGAGCTGATGTCCATGACTGA

Ace file of the UniGene biog2_v2.0_unigene9942

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14526	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0666 FOG: Ankyrin repeat	-	-	2.0e-05	30%
FL-Next	sp=Calmodulin-binding transcription activator 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	calmodulin-binding transcription activator 3-like	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	CG-1 DNA-binding domain	IPR005559	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GSA7

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 115 - 1032

Fln protein: SVGIVEKAILRWRRKRVGLRGFRAEATIADSESQGKSDEYDFLRVGRKQTVAGVEKALARVQSMVRYPEARDQYRRLVTNFQKIKVGMGQITDGGDSQQEKENKTNENDELMSMT

Protein Length: 116

Fln nts: GGTCAGTTGGAATTGTTGAAAAAGCAATCTTGCGTTGGAGGCGTAAGCGAGTTGGATTACGTGGTTTCCGGGCAGAGGCAACAATAGCAGATTCAGAGTCACAAGGGAAAAGTGATGAGTATGATTTTCTGCGAGTAGGTAGAAAGCAGACAGTGGCCGGTGTAGAAAAGGCTCTTGCACGGGTGCAGTCTATGGTCCGTTATCCGGAAGCACGAGATCAATATCGGCGGCTGGTGACAAATTTCCAGAAAATCAAGGTTGGTATGGGACAGATTACAGATGGTGGTGACTCCCAGCAGGAGAAAGAGAACAAGACAAATGAAAATGATGAGCTGATGTCCATGACTGA

Fln Alignment:

biogeco2_mira_c5824___SVGIVEKAILRWRRKRVGLRGFRAEATIAD-SESQGKSDEYDFLRVGRKQTVAGVEKALARVQSMVRYPEARDQYRRLVTNFQKIKVGMGQITDGGDSQQEKENKTNENDE
Q8GSA7_________________SVGVLEKVILRWRRKGAGLRGFKSEALVEKMQDGTEKEEDDDFFKQGRKQTEDRLQKALARVKSMVQYPEARDQYRRLLNVV-------------NDIQESKVEKALENSE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain