SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9832

Length: 341 nt

UniGene Fasta

>biog2_v2.0_unigene9832
ATGGGGGGAAAACAATGCTAGCCAAAGCTGTTGCAACGGAAGCCGGTGCCAATTTTATAAATATTCAATGTCAAGCATTACATCAAAGTGGTTGGTGAAGGTGAAAAGTATGTCAAAGCGGTATTTTCATTGGCGAGTAAAATTTCACCAAGTGTCATATTTGTTGACGAGGTTGACAGTATGTTGGGTCGAAGGGAGAGTCCTGGAGAACATGAGGCCATGCGTAAGATGAAAATGAGTTTATGGTAAACTGGGATGGATTGCGCACTAAGGACAAGGAACGAGTACTAGTTCTTGCTGCAACCAATAGACCTTTGATCTTGATGAAGCTGTCATCCGAA

Ace file of the UniGene biog2_v2.0_unigene9832

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28258	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] dbj\|BAF01763.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE82177.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 147 aas, your sequence is shorter than subject: 113 - 388

Fln protein: GGKTMLAKAVATEAGANFINIQCQALHQSGW*R*KVCQSGIFIGE*NFTKCHIC*RG*QYVGSKGESWRT*GHA*DENEFMVNWDGLRTKDKERVLVLAATNRPLILMKLSSE

Protein Length: 114

Fln nts: ATGGGGGGAAAACAATGCTAGCCAAAGCTGTTGCAACGGAAGCCGGTGCCAATTTTATAAATATTCAATGTCAAGCATTACATCAAAGTGGTTGGTGAAGGTGAAAAGTATGTCAAAGCGGTATTTTCATTGGCGAGTAAAATTTCACCAAGTGTCATATTTGTTGACGAGGTTGACAGTATGTTGGGTCGAAGGGAGAGTCCTGGAGAACATGAGGCCATGCGTAAGATGAAAATGAGTTTATGGTAAACTGGGATGGATTGCGCACTAAGGACAAGGAACGAGTACTAGTTCTTGCTGCAACCAATAGACCTTTGATCTTGATGAAGCTGTCATCCGAA

Fln Alignment:

biogeco2_mira_c5635___GKTMLAKAVATEAGANFINIQCQALHQSGW*R*KVCQSGIFIGE*NFTKCHI-C*RG*QYVGSKGESWRT*GHA*DENEFMVNWDGLRTKDKERVLVLAATNRP
D5AE60_________________GKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRRSSEQE-AFTNMKTEFMALWDGFTTDQTARVTVLAATNRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain