SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9823

Length: 348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9823
ATGGGTGAAAAAGGCTGAGAAGGCTCTTGTGGACAAAGCTGAGAAGTCTTCATTTCAATTCAGCACAACATCACGGAATCTCAAAGTCTACCAGCAGAGATGTCATATCCTCTACTACTTCTCAAAGCATGTCCTCTGTCAGCACTAGGACAGATGGAAGTAACTCGTCAAATCTGACATCTGAAGTCAAATTCTGCCTTCAGCCAATCTGAGGGTTTTCAACTTTAACCTGCTGAAAAGTGCTACAAGGAACTTCCGTCCAGACAGTCTTGTAGGGGAAGGAGGCTTTGGTTGTGTTTTCAAGGGATGGATTGATGAACAAGGAACCATGGCAGCCAAACCAGGCAT

Ace file of the UniGene biog2_v2.0_unigene9823 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3255	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein kinase APK1A [Trifolium pratense]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	protein kinase apk1a	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	0.0	79%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	defense response to insect	GO:0002213	Biological Process	79%
Blast2go	defense response to fungus	GO:0050832	Biological Process	79%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	79%
Blast2go	non-membrane spanning protein tyrosine kinase activity	GO:0004715	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKD8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 24 aas, your sequence is shorter than subject: 115 - 182

Fln protein: WVKKAEKALVDKAEKSSFQFSTTSRNLKVYQQRCHILYYFSKHVLCQH*DRWK*LVKSDI*SQILPSANLRVFNFNLLKSATRNFRPDSLVGEGGFGCVFKGWIDEQGTMAAKPG

Protein Length: 116

Fln nts: ATGGGTGAAAAAGGCTGAGAAGGCTCTTGTGGACAAAGCTGAGAAGTCTTCATTTCAATTCAGCACAACATCACGGAATCTCAAAGTCTACCAGCAGAGATGTCATATCCTCTACTACTTCTCAAAGCATGTCCTCTGTCAGCACTAGGACAGATGGAAGTAACTCGTCAAATCTGACATCTGAAGTCAAATTCTGCCTTCAGCCAATCTGAGGGTTTTCAACTTTAACCTGCTGAAAAGTGCTACAAGGAACTTCCGTCCAGACAGTCTTGTAGGGGAAGGAGGCTTTGGTTGTGTTTTCAAGGGATGGATTGATGAACAAGGAACCATGGCAGCCAAACCAGGCAT

Fln Alignment:

biogeco2_mira_c5623___SANLRVFNFNLLKSATRNFRPDSLVGEGGFGCVFKGWIDEQGTMAAKPG
B8LKD8_________________ASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
180			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain