SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9804

Length: 420 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9804
AAGGATCTCACAAAGCCCATGCAGTGACTGCAATAATAGCTGTTGTTTGCAGTTTGGTTGTCCTGTTAATAATGTTGCTTGGATTCTGCTGCTACAAACGTTCAAAAGCCCGGAGGATTAATAGATCCTTCCTTAAAGCCAATTGTAGGAGGAGTCCCGGACAGTCCAGTGGTTCCTATGCTTCAGATCTGGAGAAAAGTTCAGCAGAGTACACGAATCCTTCGGTTTCTTCCATGCGGGTCATCTCAACGACTCCGGAAGTTCAGGTTTTCACATATAAACAGCTTCGATTTGCCACAAACAACTTCAGCTCTGCCAATGTGATTGGAAATGGGGCTTTGGTTTGGTGTATAGGAGTGTCCTGCTTGATGGCAGAGTGACAGCCATCAAACAGCTTGACAGAGATGGCCAACAAGGAGA

Ace file of the UniGene biog2_v2.0_unigene9804 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5135	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AEE79818.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	protein kinase family protein	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	67%
Blast2go	ATP binding	GO:0005524	Molecular Function	67%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 335 and 335, Distance to subject end: 310 aas, your sequence is shorter than subject: 116 - 402

Fln protein: MLLGFCCYKRSKARRINRSFLKANCRRSPGQSSGSYASDLEKSSAEYTNPSVSSMRVISTTPEVQVFTYKQLRFATNNFSSANVIGNxxFGLVYRSVLLDGRVTAIKQLDRDGQQG

Protein Length: 117

Fln nts: AAGGATCTCACAAAGCCCATGCAGTGACTGCAATAATAGCTGTTGTTTGCAGTTTGGTTGTCCTGTTAATA_-_ATGTTGCTTGGATTCTGCTGCTACAAACGTTCAAAAGCCCGGAGGATTAATAGATCCTTCCTTAAAGCCAATTGTAGGAGGAGTCCCGGACAGTCCAGTGGTTCCTATGCTTCAGATCTGGAGAAAAGTTCAGCAGAGTACACGAATCCTTCGGTTTCTTCCATGCGGGTCATCTCAACGACTCCGGAAGTTCAGGTTTTCACATATAAACAGCTTCGATTTGCCACAAACAACTTCAGCTCTGCCAATGTGATTGGAAATxxxxxxTTTGGTTTGGTGTATAGGAGTGTCCTGCTTGATGGCAGAGTGACAGCCATCAAACAGCTTGACAGAGATGGCCAACAAGGAGA

Fln Alignment:

biogeco2_mira_c5597___VISTTPEVQVFTYKQLRFATNNFSSANVIGNGGFGLVYRSVLLDGRVTAIKQLDRDGQQG
A9NWR4_________________VISSIPDVKVYPYAELKIATNIFHLDNKIGSGGFGSVYKGTLKDGTVVAVKQLSAQSKQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain