SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9710

Length: 237 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9710
ACCAACTCACTTGGCAATTGTTATGGAGTATGCGTCTGGGGGAGAGCTCTTTGAGCGCATTTGTAATGCTGGTCGCTTTAGCGAGGATGAGGCTCGTTTTTTCTTCCAGCAGCTCATATCAGGGGTGAAGTATTGCCATTCTATGCAAGTTTGTCATCGGGATCTTAAGCTGGAGAACACACTTTTGGATGGAAGCCCTGCTCCTCGTCTGAAGATTTGTGATTTTGGTTACTCAAA

Ace file of the UniGene biog2_v2.0_unigene9710 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3846	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] emb\|CAB80112.1\| protein kinase-like protein [Arabidopsis thaliana]	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	regulation of anion channel activity	GO:0010359	Biological Process	91%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	protein phosphatase binding	GO:0019903	Molecular Function	91%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR015740	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKB4

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 78 - 356

Fln protein: PTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVKYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYS

Protein Length: 79

Fln nts: ACCAACTCACTTGGCAATTGTTATGGAGTATGCGTCTGGGGGAGAGCTCTTTGAGCGCATTTGTAATGCTGGTCGCTTTAGCGAGGATGAGGCTCGTTTTTTCTTCCAGCAGCTCATATCAGGGGTGAAGTATTGCCATTCTATGCAAGTTTGTCATCGGGATCTTAAGCTGGAGAACACACTTTTGGATGGAAGCCCTGCTCCTCGTCTGAAGATTTGTGATTTTGGTTACTCAAA

Fln Alignment:

biogeco2_mira_c5440___PTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVKYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYS
B8LKB4_________________PTHLAIVMEYAAGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
21	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain