SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9547

Length: 491 nt

UniGene Fasta

>biog2_v2.0_unigene9547
ACTGTTTGCCTTCCAAGGCCGGCTAAAATGGTTGCTGGGCTGAGGGCCTCCACTGCAAATATTTTATAGATAACGGTCCTTACAGAAAGTTTCTTTTCAAGCATTTTCAAGTGGCTTCTGTGGATGAAGAGAGTGCAGCAGTAGTTCTAACTTGTCTGTCAAACAAACTGAATGTCATTGTTTTCAGAGGGATGTCTGATTTGGCTGGATCCCAGCAAGGGGAGAATCCGATCGCTATTTTTGGGCCCTTGGCAGCTAGGAACGCTGTCAAGGCTACACTGGAGTTCATTAAGAGATTGCCCAAATCTGCTCTTGTTACATAGTCACACAAATTCTGAGATCAATACAGCAGAGTAAATGCTACTGCATGCACTATACTCTGTAGCACAATAAATCTTGTTTATTTTGATGTAACATTGGAAATCTCACTTACACTGTATTGAGTTGGTCTTCCTTTAGGGTTGTAGTGAGAAAATAATTCCACTACTATA

Ace file of the UniGene biog2_v2.0_unigene9547

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21640	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	phosphorylase family protein [Arabidopsis thaliana] dbj\|BAC43650.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63378.1\| At4g24340 [Arabidopsis thaliana] gb\|AEE84891.1\| phosphorylase family protein [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	phosphorylase family protein	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	0.0	62%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Nucleoside phosphorylase domain	IPR000845	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Peptidyl-tRNA hydrolase, PTH2	IPR002833	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Nucleoside phosphorylase	IPR018017	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL97

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 107 - 346

Fln protein: CLPSKAG*NGCWAEGLHCKYFIDNGPYRKFLFKHFQVASVDEESAAVVLTCLSNKLNVIVFRGMSDLAGSQQGENPIAIFGPLAARNAVKATLEFIKRLPKSALVT*

Protein Length: 108

Fln nts: ACTGTTTGCCTTCCAAGGCCGGCTAAAATGGTTGCTGGGCTGAGGGCCTCCACTGCAAATATTTTATAGATAACGGTCCTTACAGAAAGTTTCTTTTCAAGCATTTTCAAGTGGCTTCTGTGGATGAAGAGAGTGCAGCAGTAGTTCTAACTTGTCTGTCAAACAAACTGAATGTCATTGTTTTCAGAGGGATGTCTGATTTGGCTGGATCCCAGCAAGGGGAGAATCCGATCGCTATTTTTGGGCCCTTGGCAGCTAGGAACGCTGTCAAGGCTACACTGGAGTTCATTAAGAGATTGCCCAAATCTGCTCTTGTTACATAG___TCACACAAATTCTGAGATCAATACAGCAGAGTAAATGCTACTGCATGCACTATACTCTGTAGCACAATAAATCTTGTTTATTTTGATGTAACATTGGAAATCTCACTTACACTGTATTGAGTTGGTCTTCCTTTAGGGTTGTAGTGAGAAAATAATTCCACTACTATA

Fln Alignment:

biogeco2_mira_c5187___GLHCKYFIDNGPYRKFLFKHFQXXXXXXXXXXXXLTCLSNKLNVIVFRGMSDLAGSQQGE-NPIAIFGPLAARNAVKATLEFIKRL
B8LL97_________________GSSANVFVDNAAYRNFLYTKFNISPIDMESAAVALVCLEQGLPFIAIRSLSDLAGGGTSESNQAAVFAGLASQNAVTAVIQFIKDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain