SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9283

Length: 333 nt

UniGene Fasta

>biog2_v2.0_unigene9283
ATGGGGGGAACTCTAAATACTCCCTCATCTATCACCTGCAATCCCTGCTCTATCATGCGACCATAAAGTTGCTTAGATAGAGCGGGTTAAATATGGTGAATCCACGAAGAAAGACGCTCACGATGTCAAGACAGAGGATAACGCTGAGAATCGCGAGAGGCAGAGGTTGCGTAAGCTGGCATTTAGCAGAAAATTAATCTCTCAGACAAGAGCAAACCCTAGTCGTCCATTACAACCTACGAAACCCATTCTCAACTGCGATGGCAAAGATATCGTGAAGAAAGGCCAGAGGAAAAGTAAATACCTCTTTTCCTCCCTTGCCTGATAGCGCCT

Ace file of the UniGene biog2_v2.0_unigene9283

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3140	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	ROOT HAIRLESS 1 [Arabidopsis thaliana]	-	-	47%
FL-Next	sp=DNA-binding protein RHL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	39%
Blast2go	root hairless 1	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	root hair initiation	GO:0048766	Biological Process	58%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	58%
Blast2go	DNA binding	GO:0003677	Molecular Function	58%
Blast2go	protein binding	GO:0005515	Molecular Function	58%
Blast2go	nucleolus	GO:0005730	Cellular Component	58%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: O81242

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 272 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 83 - 355

Fln protein: IERVKYGESTKKDAHDVKTEDNAENRERQRLRKLAFSRKLISQTRANPSRPLQPTKPILNCDGKDIVKKGQRKSKYLFSSLA*

Protein Length: 84

Fln nts: ATGGGGGGAACTCTAAATACTCCCTCATCTATCACCTGCAATCCCTGCTCTATCATGCGACCATAAAGTTGCTTAGATAGAGCGGGTTAAATATGGTGAATCCACGAAGAAAGACGCTCACGATGTCAAGACAGAGGATAACGCTGAGAATCGCGAGAGGCAGAGGTTGCGTAAGCTGGCATTTAGCAGAAAATTAATCTCTCAGACAAGAGCAAACCCTAGTCGTCCATTACAACCTACGAAACCCATTCTCAACTGCGATGGCAAAGATATCGTGAAGAAAGGCCAGAGGAAAAGTAAATACCTCTTTTCCTCCCTTGCCTGATAGCGCCT

Fln Alignment:

biogeco2_mira_c4720___STKKDAHDVKTEDNAENRERQRLRKLAFSRKLISQTRANPSRPLQPTKPILNCDGKDIVKKGQRKSKYLFS
O81242_________________SSKKGGSKGGDKDDAESKQRKRLKTLALDNQLLSDSPAKSHSSLKPSKQVLKHHGTDIIRKSQRKNRFLFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain