SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9250

Length: 434 nt

UniGene Fasta

>biog2_v2.0_unigene9250
AACAGTGATGTAGTTGAGATGGCAAGCTATGCACCATTGTTTGTCAATGTTAATAGCCGCAGATGGAACCCAGATGCTATTGTATTTGATTCATGGCAGCAATATGGGACTCCAAGCTACTGGGTGCAACAATTCTTCAGGGAATCAAGTGGTGCTGTACTTCTTCCTGTTACAATACAAGAAAATGCTACATCTGCTTTGGTTGCTTCTGCAATAAGGTGGAGTAGCTTAGAGGATGGAGAAGATTACATCAGAGTGAAGGCTGTAATTTTGGCAGTTCTCTGCTGACACTTGACATTATGATAAGTGGCTTACCTGTTGGAAGCATACGCTCTTCAGGTTCAAAAAAAACCATTCTGACATCTGATAATTTGATGGATGAAAATCTTTTGACATGCCACAAAAGATCGCGCCTAGAGCAACAGAACTTGTAA

Ace file of the UniGene biog2_v2.0_unigene9250

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3279	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-L-arabinofuranosidase n=2 Tax=Fragaria x ananassa RepID=B3F8C4_FRAAN	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	alpha-l-arabinofuranosidase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		81%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Alpha-N-arabinofuranosidase.	EC:3.2.1.55	-	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	L-arabinose metabolic process	GO:0046373	Biological Process	81%
Blast2go	xylan catabolic process	GO:0045493	Biological Process	81%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	81%
Blast2go	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	81%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	81%
Blast2go	vacuole	GO:0005773	Cellular Component	81%
Blast2go	apoplast	GO:0048046	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha-L-arabinofuranosidase, C-terminal	IPR010720	-	0.0	-
Sma3	Carbohydrate-binding, CenC-like	IPR003305	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKP3

Fln msg: Overlapping hits, possible frame ERROR between 267 and 237, and overlapping frame ERROR between 386 and 386, Distance to subject end: 30 aas, your sequence is shorter than subject: 145 - 662

Fln protein: NSDVVEMASYAPLFVNVNSRRWNPDAIVFDSWQQYGTPSYWVQQFFRESSGAVLLPVTIQENATSALVASAIRWSSLExxxxxxxxxxxxFGSSLLTLDIMISGLPVGSIRSSGSKKTILTSDNLMDxxxFDMPQKIAPRATELV

Protein Length: 146

Fln nts: AACAGTGATGTAGTTGAGATGGCAAGCTATGCACCATTGTTTGTCAATGTTAATAGCCGCAGATGGAACCCAGATGCTATTGTATTTGATTCATGGCAGCAATATGGGACTCCAAGCTACTGGGTGCAACAATTCTTCAGGGAATCAAGTGGTGCTGTACTTCTTCCTGTTACAATACAAGAAAATGCTACATCTGCTTTGGTTGCTTCTGCAATAAGGTGGAGTAGCTTAGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGGCAGTTCTCTGCTGACACTTGACATTATGATAAGTGGCTTACCTGTTGGAAGCATACGCTCTTCAGGTTCAAAAAAAACCATTCTGACATCTGATAATTTGATGGATGAxxxxxxTTTTGACATGCCACAAAAGATCGCGCCTAGAGCAACAGAACTTGTAA

Fln Alignment:

biogeco2_mira_c4673___NSDVVEMASYAPLFVNVNSRRWNPDAIVFDSWQQYGTPSYWVQQFFRESSGAVLLPVTIQENATSALVASAIRxxxxxxxxxxxxxxxxNFGSSLLTLDIMISGLPVGSIRSSGSKKTILTSDNLMDENSFDMPQKIAPRATEL
B8LKP3_________________NSDVVEMASYAPLFVNTNNRRWNPDAIVFDSWQQYGTPSYWVQHFFRESSGAVLLPVIIQENATSALIASAIRxxxxxxxxxxxxxxxxNFGSSLLTLDISISGLPVGSISSSGSKITVLTSDNLMDENSFDKPEKIVPRATEI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
234			66	33	0.997452
236	66		33		0.997452
237			33	66	0.997452
267	25			75	0.996474
271	25			75	0.996474
305		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain