SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9209

Length: 433 nt

UniGene Fasta

>biog2_v2.0_unigene9209
ATGGGAATGCTTGTCCCATCTGCTTCTGTGATATCGAAGACTGCTACAGACTCGAAGGATGTGGGCATGCCTTCTGCAGATCATGCCTAGTTGAGCAGTGTAACTCAGCCATCCGTCATCATGAGGGATTTCCTCTTGTTTGTGCTCGTGAAGATTGCAACCATTTGTTCTTAGTTGCTGATCTAAAATCCTTGGTCTCCAGTGAGGCACTGGATGACTTATTTAGAGCTTCTCTCGGGGCATTTGTAGCTTCGAGCAAAGGTACCTACAGATTCTGCACCACCCCAGATTGCCCATCAATATATGAGGTGTCAACTTCTGGTAGACTCTTTGTTTGTGGCAGTTGTTCGGTGGAGTTGTGTACAACCTGTCATCTAGAGTATCATCCGTACCTGTCATGTGAAGACTATAGAGAATTCAAGCAAGATCCCGA

Ace file of the UniGene biog2_v2.0_unigene9209

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2713	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger-related and helicase and IBR domain-containing protein [Arabidopsis thaliana] sp\|P0CE10.1\|Y4102_ARATH RecName: Full=Putative uncharacterized protein At4g01020, chloroplastic; Flags: Precursor gb\|AEE81967.1\| zinc finger-related and helicase and	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	uncharacterized protein chloroplastic-like	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	70%
Blast2go	helicase activity	GO:0004386	Molecular Function	70%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	70%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9Q5

Fln msg: Distance to subject end: 159 aas, your sequence is shorter than subject: 143 - 579

Fln protein: GNACPICFCDIEDCYRLEGCGHAFCRSCLVEQCNSAIRHHEGFPLVCAREDCNHLFLVADLKSLVSSEALDDLFRASLGAFVASSKGTYRFCTTPDCPSIYEVSTSGRLFVCGSCSVELCTTCHLEYHPYLSCEDYREFKQDP

Protein Length: 144

Fln nts: ATGGGAATGCTTGTCCCATCTGCTTCTGTGATATCGAAGACTGCTACAGACTCGAAGGATGTGGGCATGCCTTCTGCAGATCATGCCTAGTTGAGCAGTGTAACTCAGCCATCCGTCATCATGAGGGATTTCCTCTTGTTTGTGCTCGTGAAGATTGCAACCATTTGTTCTTAGTTGCTGATCTAAAATCCTTGGTCTCCAGTGAGGCACTGGATGACTTATTTAGAGCTTCTCTCGGGGCATTTGTAGCTTCGAGCAAAGGTACCTACAGATTCTGCACCACCCCAGATTGCCCATCAATATATGAGGTGTCAACTTCTGGTAGACTCTTTGTTTGTGGCAGTTGTTCGGTGGAGTTGTGTACAACCTGTCATCTAGAGTATCATCCGTACCTGTCATGTGAAGACTATAGAGAATTCAAGCAAGATCCCGA

Fln Alignment:

biogeco2_mira_c4611___CGHAFCRSCLVEQCNSAIRHHEGFPLVCAREDCNHLFLVADLKSLVSSEALDDLFRASLGAFVASSKGTYRFCTTPDCPSI---------------YEVSTSGRLFVCGSCSVELCTTCHLEYHPYLSCEDYREFKQD
D5A9Q5_________________CFHKFCSHCMVRYVDSKLQTSQ-VPIRCPQIGCEHYMSVEECKAFLPDACFEALLKALAEANIPDSKRVY--CPFPNCSAMFDKGQDTSARASSSSYPEDTTIRCVECPECHRLFCADCCVPWHSSMSCEDYQSLPAD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
61	33		66		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain