SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9196

Length: 361 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9196
AAGCCTTCATAGACAGGGCTCTAATCAACTCTTTCACCGTTCGAATGCGTTTGGGAGTATTTGATGGTAATCCAGCAACGCAGCCCTTTGGTAATCTTGGACCTCGTGATGTTTGTAGTGAGCAGCATCAGCAACTGGCGTTGGAGGCTGCAAGGGAGGGGATAGTTCTGTTAAAAACAATAATAGAGTATTGCCATTATTCCAAACCAGAACAAGAACTTTGGCTGTCATTGGACCCAATGCAGATGTCACCAACGTCATGATTGGCAACTATGCAGGTATACCATGTAGATACACAACACCCCGACAAGGTCTGGGTAAATATGCAACAACTATATATAAGCCTGGCTGTCAAAATGTG

Ace file of the UniGene biog2_v2.0_unigene9196 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene168	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	[G] COG1472 Beta-glucosidase-related glycosidases	-	-	40%
FL-Next	sp=Probable beta-D-xylosidase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	beta-xylosidase alpha-l-arabinofuranosidase 2-like	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	74%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	74%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%
Blast2go	cell wall	GO:0005618	Cellular Component	74%
Blast2go	apoplast	GO:0048046	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LJN4

Fln msg: Separated hits, possible frame ERROR between 176 and 179, Distance to subject end: 317 aas, your sequence is shorter than subject: 120 - 781

Fln protein: AFIDRALINSFTVRMRLGVFDGNPATQPFGNLGPRDVCSEQHQQLALEAAREGIVLLxxNNRVLPLFQTRTRTLAVIGPNADVTNVMIGNYAGIPCRYTTPRQGLGKYATTIYKPGCQNV

Protein Length: 121

Fln nts: AAGCCTTCATAGACAGGGCTCTAATCAACTCTTTCACCGTTCGAATGCGTTTGGGAGTATTTGATGGTAATCCAGCAACGCAGCCCTTTGGTAATCTTGGACCTCGTGATGTTTGTAGTGAGCAGCATCAGCAACTGGCGTTGGAGGCTGCAAGGGAGGGGATAGTTCTGTTAAAxxxCAATAATAGAGTATTGCCATTATTCCAAACCAGAACAAGAACTTTGGCTGTCATTGGACCCAATGCAGATGTCACCAACGTCATGATTGGCAACTATGCAGGTATACCATGTAGATACACAACACCCCGACAAGGTCTGGGTAAATATGCAACAACTATATATAAGCCTGGCTGTCAAAATGTG

Fln Alignment:

biogeco2_mira_c4589___IDRALINSFTVRMRLGVFDGNPATQPFGNLGPRDVCSEQHQQLALEAAREGIVLLKxNNRVLPLFQTRTRTLAVIGPNADVTNVMIGNYAGIPCRYTTPRQGLGKYA--TTIYKPGCQNV
Q9LJN4_________________VDEALIYNYIVLMRLGFFDGDPKSLPFGNLGPSDVCSKDHQMLALEAAKQGIVLLExNRGDLPLPKTTVKKLAVIGPNANATKVMISNYAGVPCKYTSPIQGLQKYVPEKIVYEPGCKDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain