SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9181

Length: 569 nt

UniGene Fasta

>biog2_v2.0_unigene9181
GGGCCATGGGGTATCCTAAGGAGACACAGATATATGTAGCTTCTGGACAAGTCTATGGTGGTCAAAACCGCATGGCTCCTCTCAGAAACATGTTTCCAAATCTGGTCACAAAGGAAGAATTGGCAACAACGGAAGAATTAAAGCCCTTCAGAAAGCACATTACAAGCCTTGCAGCTCTCGATTTCCTTGTTTGTTTGAAATCTGATGTGTTTGTAATGACTCATGGTGGAAATTTTGCTAAATTGATCATAGGGGCTCGGAGATATATGGGACACCGCCTGAAATCTATAAAACCGAATAAAGGCTTGATGACAAGATCCTTGGGAGATCCTTTCCTAGGCTGGACAGCATTTAGAGAGGATATAGTGGTTTCACATGAAACAAGAACAGGGTTGCCAGAGCCAACCTTTCCTGTTTATGATATATGGGAAAATCCTTTGAGCCACTGCATGTGCAAAGTTTGAAATTCCGTTTTCCGAGATTTAATTATTTCTAGCTTCCCGCTAATTGTGAGTCACGAAATCAGTGACATTGTTTGCCCCTTCCAATAGATTGTAAATAGTATCGTT

Ace file of the UniGene biog2_v2.0_unigene9181

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4043	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] dbj\|BAB02197.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAE98825.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE77150.1\| O-fucosyltransferase family protein [Arabidopsis thaliana]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	duf246 domain-containing protein at1g04910-like	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	91%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	91%

Source	InterPros	Term	Type	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3		IPR004348	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: your sequence is shorter than subject: 154 - 634

Fln protein: AMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELATTEELKPFRKHITSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPNKGLMTRSLGDPFLGWTAFREDIVVSHETRTGLPEPTFPVYDIWENPLSHCMCKV*

Protein Length: 155

Fln nts: GGGCCATGGGGTATCCTAAGGAGACACAGATATATGTAGCTTCTGGACAAGTCTATGGTGGTCAAAACCGCATGGCTCCTCTCAGAAACATGTTTCCAAATCTGGTCACAAAGGAAGAATTGGCAACAACGGAAGAATTAAAGCCCTTCAGAAAGCACATTACAAGCCTTGCAGCTCTCGATTTCCTTGTTTGTTTGAAATCTGATGTGTTTGTAATGACTCATGGTGGAAATTTTGCTAAATTGATCATAGGGGCTCGGAGATATATGGGACACCGCCTGAAATCTATAAAACCGAATAAAGGCTTGATGACAAGATCCTTGGGAGATCCTTTCCTAGGCTGGACAGCATTTAGAGAGGATATAGTGGTTTCACATGAAACAAGAACAGGGTTGCCAGAGCCAACCTTTCCTGTTTATGATATATGGGAAAATCCTTTGAGCCACTGCATGTGCAAAGTTTGA___AATTCCGTTTTCCGAGATTTAATTATTTCTAGCTTCCCGCTAATTGTGAGTCACGAAATCAGTGACATTGTTTGCCCCTTCCAATAGATTGTAAATAGTATCGTT

Fln Alignment:

biogeco2_mira_c4562___AMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVXXXXXXXXXXXXPFRKHITSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPNKGLMTRSLGDPFLG---WTAFREDIVVSHETRTGLP----EPTFPVYD--IWENPLSHCMCK
B8LQ81_________________ALGYLPTTNIYIAAGEIYGNGS-MRALQNEFPNVFSHSTLATEEELEPFKNYQNRLAALDYILALESDVFLYTYDGNMAKAVQGHRRFEGFR-KTINPDRENLIKLIDEMDQGQISWNSFASKVKATHSNRVGAPYLREAGDFPRLEENFYANPFPGCICE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain