SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9138

Length: 567 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9138
TAACACAATGATGTTTTAGCCAAGAAGCTGTCGATGGAGACTCAGGGTTTTGCGGTCGCGACCCAGGGTTTTGCGGGGCTGAAGAATTTAAACCCAAACCAGCTACCGGGGGTTCTGACCAGACTGATCACAACGGTGGCGTAACTGTTCCCAATGTTGGCGGCGTTGGCGGAGGGCCAAAGAAGAGGTCAAAGAATTGGAAGCGAGCGGAGGTTCTGCGGTTAATTAAGTTTAGGGCTGAGATGGAGTCGAGATTTGCCAAGTCCGCTCGGCGGGCGGCGCTGTGGGAAGAGCTTGCTGAGCCTTTGGGGCGGAGGGTATTAAGCGGGATGGGAAGCAGTGCAGAGAAAATGGGACAAGCTCATGGCAGAGTTCAAAGATGTGAGCGATGGCAAGAGGGACCGGAGCGAGAGCCCTTATTATGCAGAACTCACGGCTACCGTTGGCACTGGTCGCTCTGCCGAAGCAGGGTGAAATTTCTAGGATTAAGCGTGGGGTGAAGCTCTGCAACTTCTCTATTGGCCTAAGTAAACATTAATATAATTTCTTTCTGTAAGATCATGTATC

Ace file of the UniGene biog2_v2.0_unigene9138 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27556	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-binding factor, putative [Arabidopsis thaliana] gb\|AAP68263.1\| At1g33240 [Arabidopsis thaliana]	-	-	1.0e-11	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	gt-2 factor	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to water deprivation	GO:0042631	Biological Process	62%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	62%
Blast2go	regulation of stomatal complex patterning	GO:2000037	Biological Process	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Myb-like domain	IPR017877	-	0.0	-
Sma3	SANT/Myb domain	IPR001005	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: warning!, putative chimeric sequence! or repetitive structureatg_distance in limit (1-15): atg_distance = 9, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 155 - 378

Fln protein: CFSQEAVDGDSGFCGRDPGFCGAEEFKPKPATGGSDQTDHNGGVTVPNVGGVGGGPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARxxxxxxxxxxxxGAEGIKRDGKxxxxxWDKLMAEFKDVSDGKRDRSESPYYAELTATVGTGRSAEAG*

Protein Length: 156

Fln nts: TAACACAATGATGTTTTAGCCAAGAAGCTGTCGATGGAGACTCAGGGTTTTGCGGTCGCGACCCAGGGTTTTGCGGGGCTGAAGAATTTAAACCCAAACCAGCTACCGGGGGTTCTGACCAGACTGATCACAACGGTGGCGTAACTGTTCCCAATGTTGGCGGCGTTGGCGGAGGGCCAAAGAAGAGGTCAAAGAATTGGAAGCGAGCGGAGGTTCTGCGGTTAATTAAGTTTAGGGCTGAGATGGAGTCGAGATTTGCCAAGTCCGCTCGGCGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGGGCGGAGGGTATTAAGCGGGATGGGAAGCAxxxxxxxxxxxxATGGGACAAGCTCATGGCAGAGTTCAAAGATGTGAGCGATGGCAAGAGGGACCGGAGCGAGAGCCCTTATTATGCAGAACTCACGGCTACCGTTGGCACTGGTCGCTCTGCCGAAGCAGGGTGAAATTTCTAGGATTAAGCGTGGGGTGAAGCTCTGCAACTTCTCTATTGGCCTAAGTAAACATTAATATAATTTCTTTCTGTAAGATCATGTATC

Fln Alignment:

biogeco2_mira_c4497___DPGFCGAEEFKPKPATGGSDQTDHXXXXXXXXXXXXXXXPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRxxxxxxxxxxxGAEGIKRDGKQCxxKWDKLMAEFKDVSDGKRDRSESPYYAELTATVGTGRSAEAG
A9NRE1_________________DPGFCGFEEFKPKPTTGGSEQTDHDAGAAAITVVGGGGGPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRxxxxxxxxxxxGAEGIKRDGKQCxxKWDKLMAEFKDVSDGKRDRSESPYYAELTATVGPGRSAEAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain