SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene9103

Length: 326 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene9103
ATGGGGAGGGTCCGGGGAAGCAAATTCAATGGCAATGGGAAGGTTTCTAGTGCTGGCGTTGGCATTAGCGCTTTTGTTTGGATATGGAGTTGAAGGGAGCGCCTCTGATCACAGATACAGCAAAGGAGATCATGTCCCGCTTTATGCCAACAAAGTTGGGCCCTTTCACAACCCCAGTGAAACATACCGGTATTTTGATTTGCCATTCTGCCCTCCAGATAAGGTGACCGAGAAAAGGGAAGATCTTGGAGAAGTGTTAAATGGTGACCGAATGGTTGGTGCTCGATATAAGCTTCATTTCCAGGAAGACAAAAATTCTGAACTTC

Ace file of the UniGene biog2_v2.0_unigene9103 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15417	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative endomembrane protein 70 [Arabidopsis thaliana] gb\|AAK96649.1\| T5E21.14/T5E21.14 [Arabidopsis thaliana] gb\|AAM16222.1\| At1g14670/T5E21.14 [Arabidopsis thaliana] gb\|AEE29200.1\| putative endomembrane protein 70 [Arabidopsis thaliana]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	phagocytic receptor 1b-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	89%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	89%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX51

Fln msg: Distance to subject end: 258 aas, your sequence is shorter than subject: 99 - 355

Fln protein: MAMGRFLVLALALALLFGYGVEGSASDHRYSKGDHVPLYANKVGPFHNPSETYRYFDLPFCPPDKVTEKREDLGEVLNGDRMVGARYKLHFQEDKNSEL

Protein Length: 100

Fln nts: ATGGGGAGGGTCCGGGGAAGCAAATTCA_-_ATGGCAATGGGAAGGTTTCTAGTGCTGGCGTTGGCATTAGCGCTTTTGTTTGGATATGGAGTTGAAGGGAGCGCCTCTGATCACAGATACAGCAAAGGAGATCATGTCCCGCTTTATGCCAACAAAGTTGGGCCCTTTCACAACCCCAGTGAAACATACCGGTATTTTGATTTGCCATTCTGCCCTCCAGATAAGGTGACCGAGAAAAGGGAAGATCTTGGAGAAGTGTTAAATGGTGACCGAATGGTTGGTGCTCGATATAAGCTTCATTTCCAGGAAGACAAAAATTCTGAACTTC

Fln Alignment:

biogeco2_mira_c4438___MGRFXXXXXXXXXLFGYGVEGSASDHRYSKGDHVPLYANKVGPFHNPSETYRYFDLPFCPPDKVTEKREDLGEVLNGDRMVGARYKLHFQEDKNSEL
A9NX51_________________MGMFLVLALALAFVFAYGVEGSASDHRYSKGDHVPLYANKVGPFHNPSETYRYFDLPFCPPDKVTEKREDLGEVLNGDRMVDARYKLHFQDDKNSEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain