SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8893

Length: 488 nt

UniGene Fasta

>biog2_v2.0_unigene8893
ATGGGACAAGAAGTTGGAGGATCTTGAAAGAAAATTTGAGGAATGTGCTGCAAATGAGGAGAAGAAACTCTTGGAGAATTTTGCTAAAATGCTAGCTGCTTCGACAGCTCGAAAATCAGAATTGGTACAGTCTGCAGTGCAAAATCTGCGTGAAATGCTGTCAATAAACACATGAGTTGCAACATGGGATGTTGAGTATGCGGCATGATGCATCTGATATTCAAAATCGGTGGAAGTTATACATGAAGCAAGCTGAAAATTTCTATGTGGAGGATACAACATCATTGGCAACAGGGCACAGTTGTATGGAAGAAATTCTTCAGGAATGTATGATGAAAGCGACTGCTGCTGGAGTACAGTGGAGAGGTACACAAGATTCACTACAGAAACTTGAGAGGAGCAATGTTGAAGCTGTTGGTTCTATCATCAAGAGTGGCACTGAGGCAATCAGCTTCTTCTGGCTAGCTTTACGCAGGCTGCAGCTTCCA

Ace file of the UniGene biog2_v2.0_unigene8893

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13689	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] ref\|NP_001190017.1\| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] emb\|CAB82809.1\| kinesin-related protein-like [Arabidopsis t	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	125 kda kinesin-related	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	71%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9P3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 147 aas, your sequence is shorter than subject: 162 - 353

Fln protein: GTRSWRILKENLRNVLQMRRRNSWRILLKC*LLRQLENQNWYSLQCKICVKCCQ*THELQHGMLSMRHDASDIQNRWKLYMKQAENFYVEDTTSLATGHSCMEEILQECMMKATAAGVQWRGTQDSLQKLERSNVEAVGSIIKSGTEAISFFWLALRRLQLP

Protein Length: 163

Fln nts: ATGGGACAAGAAGTTGGAGGATCTTGAAAGAAAATTTGAGGAATGTGCTGCAAATGAGGAGAAGAAACTCTTGGAGAATTTTGCTAAAATGCTAGCTGCTTCGACAGCTCGAAAATCAGAATTGGTACAGTCTGCAGTGCAAAATCTGCGTGAAATGCTGTCAATAAACACATGAGTTGCAACATGGGATGTTGAGTATGCGGCATGATGCATCTGATATTCAAAATCGGTGGAAGTTATACATGAAGCAAGCTGAAAATTTCTATGTGGAGGATACAACATCATTGGCAACAGGGCACAGTTGTATGGAAGAAATTCTTCAGGAATGTATGATGAAAGCGACTGCTGCTGGAGTACAGTGGAGAGGTACACAAGATTCACTACAGAAACTTGAGAGGAGCAATGTTGAAGCTGTTGGTTCTATCATCAAGAGTGGCACTGAGGCAATCAGCTTCTTCTGGCTAGCTTTACGCAGGCTGCAGCTTCCA

Fln Alignment:

biogeco2_mira_c4103___LQHGMLSMRHDASDIQNRWKLYMKQAENFYVEDTTSLATGHSCMEEILQECMMKATAAGVQWRGTQDSLQKLERSNVEAVGSIIKSGTEA
D5A9P3_________________MQQGILSIDAATSDAKRKWETFAKQADNDANESAALSAAKHCRMELLLQQCVNITSNASQHWKTTKKTGEDHSRKYVTVMESLVRDGVEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain