SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8858

Length: 272 nt

UniGene Fasta

>biog2_v2.0_unigene8858
ATGGGGGGATTCACATGTGACTACAGCTGTTAGGGGTACTGTTGGGCACATAGCACCTGAGTACCTCTCAACGGGCCAGTCCTCTGAGAAGACCGATGTATTTGGTTTTGGCATATTATTATTGGAACTCATAACTGGGCAAAAGGCTTTGGATTTTGGTCGGGCAGCAAACCAGAAAGGAGTGATGCTTGATTGGGTTAAAAAACTACATCAGGAGAATAGGCTTGAAATCATGATAGACAAGGATATTAAACCCAATTATGACAGAGTTG

Ace file of the UniGene biog2_v2.0_unigene8858

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10717	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat receptor-like kinase [Ipomoea batatas]	-	-	66%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	70%
Blast2go	brassinosteroid insensitive 1-associated receptor kinase 1	-	-	81%

Source	ECs	Term	Type	Identity
Blast2go	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	81%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	81%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	receptor activity	GO:0004872	Molecular Function	81%
Blast2go	non-membrane spanning protein tyrosine kinase activity	GO:0004715	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	81%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5FY57

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 90 - 626

Fln protein: WGDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRAANQKGVMLDWVKKLHQENRLEIMIDKDIKPNYDRV

Protein Length: 91

Fln nts: ATGGGGGGATTCACATGTGACTACAGCTGTTAGGGGTACTGTTGGGCACATAGCACCTGAGTACCTCTCAACGGGCCAGTCCTCTGAGAAGACCGATGTATTTGGTTTTGGCATATTATTATTGGAACTCATAACTGGGCAAAAGGCTTTGGATTTTGGTCGGGCAGCAAACCAGAAAGGAGTGATGCTTGATTGGGTTAAAAAACTACATCAGGAGAATAGGCTTGAAATCATGATAGACAAGGATATTAAACCCAATTATGACAGAGTTG

Fln Alignment:

biogeco2_mira_c4039___DSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRAANQKGVML-DWVKKLHQENRLEIMIDKDIKPNY
D5FY57_________________DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLIDWVKGLLKERRLDMLVDPDLKNNY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain