SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8545

Length: 452 nt

UniGene Fasta

>biog2_v2.0_unigene8545
CAATTTGCCCTATTACGTTGCCCATCAGTTTGGAGGTGAGGTGTTTGATAATAGCGCTTTTAACGACTGGGTGGATCTGGCAGAGGCCCCGGCATTGGCCTCTAGCTATAGATTGTACACCCATCTGCTTGAATTGGGGGTGAAGATCTTTTTATTGACCGGTAGGGACGAGACCCAGAGGAATGCCACACAGAAAAATCTGGTCCGAGCTGGTTATCATACATGGGAAGCGCTATTGTTGAGGGGAATAGATGATCATGGGAAGACTGCTGTGCTTTATAAGTCTGAGAAGAGGTTGAAGATTGAAGAGGATGGGTTTAGGATTCGAGGGAACTCTGGTGATCAGTGGAGTGATGTGTGTGGACACGCTACTGGAAACAGAACCTTCAAGCTTCCCAATCCCATGTATTACATTGCCTGATTTTAATGTTTACTGTGTTTCATTTTGGCAT

Ace file of the UniGene biog2_v2.0_unigene8545

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5345	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Acid phosphatase (Fragment) n=1 Tax=Picea abies RepID=B2KZJ5_PICAB	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	acid phosphatase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	73%
Blast2go	Riboflavin metabolism	00740		0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein	IPR011267	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRU7

Fln msg: your sequence is shorter than subject: 140 - 275

Fln protein: NLPYYVAHQFGGEVFDNSAFNDWVDLAEAPALASSYRLYTHLLELGVKIFLLTGRDETQRNATQKNLVRAGYHTWEALLLRGIDDHGKTAVLYKSEKRLKIEEDGFRIRGNSGDQWSDVCGHATGNRTFKLPNPMYYIA*

Protein Length: 141

Fln nts: CAATTTGCCCTATTACGTTGCCCATCAGTTTGGAGGTGAGGTGTTTGATAATAGCGCTTTTAACGACTGGGTGGATCTGGCAGAGGCCCCGGCATTGGCCTCTAGCTATAGATTGTACACCCATCTGCTTGAATTGGGGGTGAAGATCTTTTTATTGACCGGTAGGGACGAGACCCAGAGGAATGCCACACAGAAAAATCTGGTCCGAGCTGGTTATCATACATGGGAAGCGCTATTGTTGAGGGGAATAGATGATCATGGGAAGACTGCTGTGCTTTATAAGTCTGAGAAGAGGTTGAAGATTGAAGAGGATGGGTTTAGGATTCGAGGGAACTCTGGTGATCAGTGGAGTGATGTGTGTGGACACGCTACTGGAAACAGAACCTTCAAGCTTCCCAATCCCATGTATTACATTGCCTGA___TTTTAATGTTTACTGTGTTTCATTTTGGCAT

Fln Alignment:

biogeco2_mira_c3476___NLPYYVAHQFGGEVFDNSAFNDWVDLAEAPALASSYRLYTHLLELGVKIFLLTGRDETQRNATQKNLVRAGYHTWEALLLRGIDDHGKTAVLYKSEKRLKIEEDGFRIRGNSGDQWSDVCGHATGNRTFKLPNPMYYIA
A9NRU7_________________NLPLYAAYNYGGADMDDGAFIKWADLAEAPALPASQRLYAHLLQLGFKIFLLTGRYDYERNATEKNLVQAGYHSWEALLLRGPDDYETTAVVYKSGRRLKIEKDGFRIRGNSGDQWSDLSGYSCGDRTFKLPNPMYFIA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
275	25		75		0.996473
359	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain